RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 METTL7BQ6UX53 244 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 CLYBLQ8N0X4 340 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 NDNFQ8TB73 568 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 TMBIM1Q969X1 311 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 AURKBQ96GD4 344 aaPredicted RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 HSFY1Q96LI6 401 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 RNF145Q96MT1 663 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 TEPSINQ96N21 525 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 BCL7BQ9BQE9 202 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 NFKBIZQ9BYH8 718 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 TOR3AQ9H497 397 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 CPNE5Q9HCH3 593 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 FBXO5Q9UKT4 447 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 PCDHB3Q9Y5E6 796 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 TSC2P49815 1807 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ANKRD34BA5PLL1 514 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 PSMD11O00231 422 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 CACNG3O60359 315 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 MGEA5O60502 916 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 KPNA6O60684 536 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ILF2Q12905 390 aaKnown RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 HIST2H2ACQ16777 129 aaPredicted RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 MEP1AQ16819 746 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ADPRMQ3LIE5 342 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 AASDHQ4L235 1098 aaPredicted RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 UNC50Q53HI1 259 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ZNF789Q5FWF6 425 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 DENND5AQ6IQ26 1287 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 OTOP3Q7RTS5 596 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 UNC93AQ86WB7 457 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ARMC8Q8IUR7 673 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 KIAA2013Q8IYS2 634 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 Q8N9G6 341 aaPredicted RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 OR7A2PQ8NGA2 310 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 OR6B3Q8NGW1 331 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ANKRD49Q8WVL7 239 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 KIF12Q96FN5 646 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 CLSTN3Q9BQT9 956 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 ALOXE3Q9BYJ1 711 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 FAM118AQ9NWS6 357 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 PAK1IP1Q9NWT1 392 aaPredicted RBP10.67□□□□□ -0.7
USP54-204ENST00000422491 DSEQ9UL01 958 aa10.67□□□□□ -0.7
USP54-204ENST00000422491 A0A1W2PP18 115 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 PIP5K1BO14986 540 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 SLC22A1O15245 554 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 NDUFS2O75306 463 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 DEAF1O75398 565 aaPredicted RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 JCHAINP01591 159 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 NTRK1P04629 796 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 AGXTP21549 392 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 KCNC1P48547 511 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 EEFSECP57772 596 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 NFYCQ13952 458 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 SLC14A2Q15849 920 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 INTS6LQ5JSJ4 861 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 SYPL2Q5VXT5 272 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 EFCAB12Q6NXP0 572 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 RBM23Q86U06 439 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 CLEC4FQ8N1N0 589 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 SPATA22Q8NHS9 363 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ZBED3Q96IU2 234 aaPredicted RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 ZMAT2Q96NC0 199 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 TMEM74Q96NL1 305 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 RDH12Q96NR8 316 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 MBOAT4Q96T53 435 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 CXCL16Q9H2A7 254 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 PARVBQ9HBI1 364 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 TREX1Q9NSU2 369 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 CITO14578 2027 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 NUP205Q92621 2012 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 H3BMM5 538 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 WNT10BO00744 389 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 NADKO95544 446 aaPredicted RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 HPRP00739 348 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 FGF4P08620 206 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 CDH1P12830 882 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ARF4P18085 180 aaPredicted RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 ACVR2AP27037 513 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 HTR1EP28566 365 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ADRA1BP35368 520 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 PIGAP37287 484 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ZFP36L2P47974 494 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 CDH13P55290 713 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 FOXA1P55317 472 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 TPI1P60174 286 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 CD47Q08722 323 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 MAPK11Q15759 364 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 LRIT3Q3SXY7 679 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 PAGE3Q5JUK9 113 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 TTC23Q5W5X9 447 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 NEK10Q6ZWH5 1172 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 AKAP14Q86UN6 197 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 STK32CQ86UX6 486 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.66□□□□□ -0.7
USP54-204ENST00000422491 OR13J1Q8NGT2 312 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 TSPEARQ8WU66 669 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 PHF10Q8WUB8 498 aaKnown RBP10.66□□□□□ -0.7
USP54-204ENST00000422491 TWIST2Q8WVJ9 160 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 VPS33AQ96AX1 596 aa10.66□□□□□ -0.7
USP54-204ENST00000422491 AMBRA1Q9C0C7 1298 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms