RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 FGF10O15520 208 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 NKX2-8O15522 239 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 PPFIA2O75334 1257 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 MYCLP1P12525 358 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 ERCC2P18074 760 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 NOP2P46087 812 aaKnown RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 POLE2P56282 527 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 CTBSQ01459 385 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 BCL2L1Q07817 233 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 TRAF2Q12933 501 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 REXO1L1PQ8IX06 675 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 PAF1Q8N7H5 531 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 CTRCQ99895 268 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 SEMA3CQ99985 751 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 CNPY3Q9BT09 278 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 FRMD8Q9BZ67 464 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 ZNF71Q9NQZ8 489 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 KCND1Q9NSA2 647 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 IP6K2Q9UHH9 426 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 CD84Q9UIB8 345 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 TMEM98Q9Y2Y6 226 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 PCDHB11Q9Y5F2 797 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 DUSP10Q9Y6W6 482 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 USP9YO00507 2555 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-202ENST00000416769 A0A0U1RQJ8 604 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 GOLGA6CA6NDK9 693 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 GOLGA6BA6NDN3 693 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 STMND1H3BQB6 276 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 TNFRSF10CO14798 259 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 PEX11BO96011 259 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 SOD1P00441 154 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 GOLGA6DP0CG33 693 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 PRKAR1AP10644 381 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 THRAP10827 490 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 TCF4P15884 667 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 DESP17661 470 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 CTPS1P17812 591 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 CSNK1DP48730 415 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 NDST2P52849 883 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 MAXP61244 160 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 CDK3Q00526 305 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 PIGHQ14442 188 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-202ENST00000416769 NR1D2Q14995 579 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 IFI16Q16666 785 aaKnown RBP12.86□□□□□ -0.35
LINC00339-202ENST00000416769 ANKS6Q68DC2 871 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 RFX8Q6ZV50 586 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 Q6ZVL8 140 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 KIAA1524Q8TCG1 905 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 PDCD6IPQ8WUM4 868 aaKnown RBP12.86□□□□□ -0.35
LINC00339-202ENST00000416769 TMEM159Q96B96 161 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 AGAP2Q99490 1192 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 TEX101Q9BY14 249 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 SP110Q9HB58 689 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 ETNK2Q9NVF9 386 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 GOLGA6AQ9NYA3 693 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 ANKMY1Q9P2S6 941 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 ANAPC7Q9UJX3 599 aa12.86□□□□□ -0.35
LINC00339-202ENST00000416769 SPENQ96T58 3664 aaKnown RBP12.86□□□□□ -0.35
LINC00339-202ENST00000416769 ICE1Q9Y2F5 2266 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 IGHV1OR21-1A0A087WYE8 117 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 CFAP69A5D8W1 941 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 GOLGA6L9A6NEM1 432 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 ARHGAP42A6NI28 874 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 EFCAB7A8K855 629 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 A8MU76 341 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 HEXIM1O94992 359 aaKnown RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 HOXC4P09017 264 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 NR1D1P20393 614 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 KELP23276 732 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 PSMA2P25787 234 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 ADCY8P40145 1251 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 LIMK2P53671 638 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 NAP1L1P55209 391 aaKnown RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 KCNAB2Q13303 367 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 IHHQ14623 411 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 GRM3Q14832 879 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 PPP6R3Q5H9R7 873 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 SNAP47Q5SQN1 464 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 FAM182AQ5T1J6 154 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 HIST2H2BCQ6DN03 193 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 BORAQ6PGQ7 559 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 MARK2Q7KZI7 788 aaKnown RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 FAM129CQ86XR2 697 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 LURAP1LQ8IV03 231 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 IL22RA1Q8N6P7 574 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 NIPA2Q8N8Q9 360 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 ZSCAN1Q8NBB4 408 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 DTD2Q96FN9 168 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 TAAR9Q96RI9 348 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 GSDMCQ9BYG8 508 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 NOD2Q9HC29 1040 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 APMAPQ9HDC9 416 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 GUCA1BQ9UMX6 200 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 PRKAB1Q9Y478 270 aa12.85□□□□□ -0.35
LINC00339-202ENST00000416769 SPTBN1Q01082 2364 aaKnown RBP12.85□□□□□ -0.35
LINC00339-202ENST00000416769 LOC101059948A0A1B0GTJ6 334 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 K7EM74 188 aa12.84□□□□□ -0.35
LINC00339-202ENST00000416769 HGSO14964 777 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 HTRA2O43464 458 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-202ENST00000416769 RAD1O60671 282 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms