RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 RORBQ92753 470 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 ZNF514Q96K75 400 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 AARSD1Q9BTE6 412 aaKnown RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 CHRAC1Q9NRG0 131 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 GDAP2Q9NXN4 497 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 GULP1Q9UBP9 304 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 HNRNPLP14866 589 aaKnown RBP eCLIP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 GNPDA1P46926 289 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 ITGA1P56199 1179 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SP2Q02086 613 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 TAF1AQ15573 450 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 NET1Q7Z628 596 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 PRICKLE1Q96MT3 831 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SLC4A5Q9BY07 1137 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 OSBPL2Q9H1P3 480 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 RPRD1BQ9NQG5 326 aaKnown RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 LRCH1Q9Y2L9 728 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 NPEPPSL1A6NEC2 478 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 AP3D1O14617 1153 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SLC22A3O75751 556 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 BLKP51451 505 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 ADGRF1Q5T601 910 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 NEK5Q6P3R8 708 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 BHLHE22Q8NFJ8 381 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SH3RF2Q8TEC5 729 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 NMUR1Q9HB89 426 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 CMPK1P30085 196 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 TOP3AQ13472 1001 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 LDLRAP1Q5SW96 308 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SCAIQ8N9R8 606 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 OR52E6Q96RD3 313 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 PCBD2Q9H0N5 130 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 PRPF19Q9UMS4 504 aaKnown RBP17.22■□□□□ 0.35
PHRF1-202ENST00000413872 PLLPQ9Y342 182 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 PCDHGC4Q9Y5F7 938 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 SQORQ9Y6N5 450 aa17.22■□□□□ 0.35
PHRF1-202ENST00000413872 STX11O75558 287 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 AKT2P31751 481 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 FEN1P39748 380 aaKnown RBP17.21■□□□□ 0.35
PHRF1-202ENST00000413872 ARMCX4Q5H9R4 360 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 TMEM139Q8IV31 216 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 PSMG2Q969U7 264 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 MYRFQ9Y2G1 1151 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 UNC5CO95185 931 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 HCAR3P49019 387 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.21■□□□□ 0.35
PHRF1-202ENST00000413872 GPR21Q99679 349 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 LINC00032P0C843 101 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 C16orf72Q14CZ0 275 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 PDGFRLQ15198 375 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 SMYD5Q6GMV2 418 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 LRRC74BQ6ZQY2 392 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 PRR23CQ6ZRP0 262 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 YTHDF3Q7Z739 585 aaKnown RBP17.21■□□□□ 0.35
PHRF1-202ENST00000413872 TMEM110Q86TL2 294 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 CLIP3Q96DZ5 547 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 C8orf48Q96LL4 319 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 ACAT2Q9BWD1 397 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 CAB39LQ9H9S4 337 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 SIX2Q9NPC8 291 aa17.21■□□□□ 0.35
PHRF1-202ENST00000413872 FCF1Q9Y324 198 aaKnown RBP17.21■□□□□ 0.35
PHRF1-202ENST00000413872 ACAP2Q15057 778 aa17.21■□□□□ 0.34
PHRF1-202ENST00000413872 TIMM50Q3ZCQ8 353 aa17.21■□□□□ 0.34
PHRF1-202ENST00000413872 MTERF3Q96E29 417 aa17.21■□□□□ 0.34
PHRF1-202ENST00000413872 FPGTO14772 594 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ZCCHC18P0CG32 403 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 TSPAN8P19075 237 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CCND3P30281 292 aaPredicted RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 NSG1P42857 185 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CYP4F8P98187 520 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 USP4Q13107 963 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CPTPQ5TA50 214 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 VITQ6UXI7 678 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 PYROXD2Q8N2H3 581 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SPATA6LQ8N4H0 392 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ANKRD49Q8WVL7 239 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ZFRQ96KR1 1074 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 Q96MT0 163 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 C3orf18Q9UK00 162 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 HEBP2Q9Y5Z4 205 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 A0A1W2PQ45 241 aaPredicted RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 A0A1W2PQY0 241 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ILVBLA1L0T0 632 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 GTPBP1O00178 669 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SLC25A12O75746 678 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 CDH13P55290 713 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 INAQ16352 499 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 DDHD1Q8NEL9 900 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 DNAJB14Q8TBM8 379 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 RERGLQ9H628 205 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 INTS10Q9NVR2 710 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 KIF1CO43896 1103 aaKnown RBP17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SMNDC1O75940 238 aaKnown RBP eCLIP17.2■□□□□ 0.346e-7■■■■□ 25.7
PHRF1-202ENST00000413872 PCCBP05166 539 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 C8GP07360 202 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 FSHRP23945 695 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 ANGPT1Q15389 498 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 SCIMPQ6UWF3 145 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 TMPRSS11BQ86T26 416 aa17.2■□□□□ 0.34
PHRF1-202ENST00000413872 PCDH19Q8TAB3 1148 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms