RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FGBP02675 491 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 TUBP50607 506 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 GIT2Q14161 759 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 FOXRED2Q8IWF2 684 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 TBC1D17Q9HA65 648 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MATN4O95460 622 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 RPLP0P05388 317 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM83AQ86UY5 434 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 OXR1Q8N573 874 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 ZBTB8BQ8NAP8 495 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 EZH1Q92800 747 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 GTPBP2Q9BX10 602 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MRPL9Q9BYD2 267 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHGA12O60330 932 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 THP07101 528 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 LIPMQ5VYY2 423 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 PIGXQ8TBF5 258 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 CPT1CQ8TCG5 803 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 TREX2Q9BQ50 279 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MTRRQ9UBK8 725 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 AFDNP55196 1824 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 WASHC1A8K0Z3 465 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 WASH3PC4AMC7 463 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 WASH2PQ6VEQ5 465 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM131BQ86XD5 332 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 DENND1CQ8IV53 801 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 CCDC28AQ8IWP9 274 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF557Q8N988 423 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 PPCDCQ96CD2 204 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 AP2M1Q96CW1 435 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SH2D3AQ9BRG2 576 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 MATKP42679 507 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ORC1Q13415 861 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 BLMHQ13867 455 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF280DQ6N043 979 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 OR14K1Q8NGZ2 314 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 KLK14Q9P0G3 267 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ASXL2Q76L83 1435 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SGPL1O95470 568 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 UROSP10746 265 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 HK1P19367 917 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 DDX6P26196 483 aaKnown RBP eCLIP13.29□□□□□ -0.282e-8■■■■■ 56.6
CCDC88A-204ENST00000413716 HMGCS2P54868 508 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC9B1Q4ZJI4 515 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 UBXN11Q5T124 520 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 USP30Q70CQ3 517 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ADGRG6Q86SQ4 1221 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ACTL9Q8TC94 416 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 CCDC120Q96HB5 630 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 CGRRF1Q99675 332 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ATG10Q9H0Y0 220 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ALDH8A1Q9H2A2 487 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ITGA11Q9UKX5 1188 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ADAMTS12P58397 1594 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 METP08581 1390 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 BORCS7-ASMTA0A0B4J1R7 106 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 RAB39AQ14964 217 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 BATFQ16520 125 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SCGB2B2Q4G0G5 96 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 C7orf61Q8IZ16 206 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TRPM4Q8TD43 1214 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 CXorf40AQ8TE69 158 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 HASPINQ8TF76 798 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 AUTS2Q8WXX7 1259 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 BORCS7Q96B45 105 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 IFNA10P01566 189 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 DNASE1L3Q13609 305 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 FSCN1Q16658 493 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 UBE2R2Q712K3 238 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 LZTR1Q8N653 840 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 OR7D4Q8NG98 312 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ANKEF1Q9NU02 776 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 LATS1O95835 1130 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TPTEP56180 551 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC25A3Q00325 362 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ADAM15Q13444 863 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM153CQ494X1 144 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 NYAP1Q6ZVC0 841 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 OR2AJ1Q8NGZ0 328 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF398Q8TD17 642 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 DNPEPQ9ULA0 475 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TEX13CA0A0J9YWL9 993 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 CHADO15335 359 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TLX3O43711 291 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 BCAS1O75363 584 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 FABP3P05413 133 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 LCN1P31025 176 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 RAB15P59190 212 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 C1orf186Q6ZWK4 172 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC41A1Q8IVJ1 513 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF366Q8N895 744 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 RDH11Q8TC12 318 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 ZFP3Q96NJ6 502 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SERPINB11Q96P15 392 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TMEM27Q9HBJ8 222 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 C11orf16Q9NQ32 467 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 TAS2R3Q9NYW6 316 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 EPCAMP16422 314 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 XKRXQ6PP77 449 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 AGPAT3Q9NRZ7 376 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms