RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 EPHB1P54762 984 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 RPL26P61254 145 aaKnown RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 OLIG2Q13516 323 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 GALNT3Q14435 633 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 FBXW10Q5XX13 1052 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 PACS1Q6VY07 963 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 PARS2Q7L3T8 475 aaKnown RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 MAML2Q8IZL2 1156 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 SLC25A41Q8N5S1 370 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 LPCAT1Q8NF37 534 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 RMDN1Q96DB5 314 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 TSSK1BQ9BXA7 367 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 UGT1A7Q9HAW7 530 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 UGT1A10Q9HAW8 530 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 UGT1A8Q9HAW9 530 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 PRMT8Q9NR22 394 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 SERGEFQ9UGK8 458 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 RPL26L1Q9UNX3 145 aaKnown RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 WDR91A4D1P6 747 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 BIRC5O15392 142 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 USP1O94782 785 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 ADRB3P13945 408 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 CHRNA4P43681 627 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 NCALDP61601 193 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 CSTF1Q05048 431 aaKnown RBP13.4□□□□□ -0.26
LIMS1-204ENST00000409441 LRRC73Q5JTD7 316 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 SIRPB2Q5JXA9 342 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TMEM31Q5JXX7 168 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 KYAT3Q6YP21 454 aaKnown RBP13.4□□□□□ -0.26
LIMS1-204ENST00000409441 USP30Q70CQ3 517 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 LINC00523Q86TU6 105 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 FAM124AQ86V42 546 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 NDUFAF2Q8N183 169 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 OR52K1Q8NGK4 314 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 CERS2Q96G23 380 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 CPNE1Q99829 537 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TBL1YQ9BQ87 522 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TRIM56Q9BRZ2 755 aaKnown RBP13.4□□□□□ -0.26
LIMS1-204ENST00000409441 C1QTNF1Q9BXJ1 281 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TRIM55Q9BYV6 548 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TPSD1Q9BZJ3 242 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 TXLNGQ9NUQ3 528 aa13.4□□□□□ -0.26
LIMS1-204ENST00000409441 FAM237BA0A1B0GVD1 139 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 HMX2A2RU54 273 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 UPK3BL1B0FP48 263 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 UPK3BL2E5RIL1 263 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 AXIN1O15169 862 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ZNF217O75362 1048 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PRKCGP05129 697 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ATXN1LP0C7T5 689 aaKnown RBP13.39□□□□□ -0.27
LIMS1-204ENST00000409441 NEFHP12036 1026 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CTPS1P17812 591 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 HLA-DPA1P20036 260 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 GP5P40197 560 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SUOXP51687 545 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 DMWDQ09019 674 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 BMPR2Q13873 1038 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PTPRRQ15256 657 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PIP5KL1Q5T9C9 394 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 GRTP1Q5TC63 336 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 MROH9Q5TGP6 573 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ATG16L1Q676U5 607 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 NAPEPLDQ6IQ20 393 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 DENND5AQ6IQ26 1287 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 TMEM135Q86UB9 458 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 KBTBD6Q86V97 674 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 RLN3Q8WXF3 142 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 RAB7BQ96AH8 199 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SCRN2Q96FV2 425 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 LRRC37BQ96QE4 947 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SMIM14Q96QK8 99 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ARNT2Q9HBZ2 717 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PCDH12Q9NPG4 1184 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CD93Q9NPY3 652 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ZFATQ9P243 1243 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 USP36Q9P275 1121 aaKnown RBP13.39□□□□□ -0.27
LIMS1-204ENST00000409441 FZD4Q9ULV1 537 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PPIL1Q9Y3C6 166 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 RPS6KL1Q9Y6S9 549 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 A0A0J9YYE9 177 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 A8MX80 341 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 GLRA3O75311 464 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 IGLV3-19P01714 112 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 TRBC1P01850 177 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ALPIP09923 528 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 TDGF1P13385 188 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 HNRNPH1P31943 449 aaKnown RBP13.39□□□□□ -0.27
LIMS1-204ENST00000409441 HNF1BP35680 557 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ABL2P42684 1182 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 GRIA4P48058 902 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 TAS2R38P59533 333 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CRADDP78560 199 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SEMG2Q02383 582 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CDH17Q12864 832 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 INSCQ1MX18 579 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 AGBL4Q5VU57 503 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 ARMC3Q5W041 872 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CDHR3Q6ZTQ4 885 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 DNAAF3Q8N9W5 541 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms