RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 DDX50Q9BQ39 737 aaKnown RBP12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 APOL2Q9BQE5 337 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 CDH19Q9H159 772 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 POLR3BQ9NW08 1133 aaPredicted RBP12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 OXSMQ9NWU1 459 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 THG1LQ9NWX6 298 aaKnown RBP12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 TAS2R1Q9NYW7 299 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 UBP1Q9NZI7 540 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 RIMKLBQ9ULI2 386 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 RUVBL2Q9Y230 463 aaKnown RBP12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 SH3BP1Q9Y3L3 701 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 ZZEF1O43149 2961 aa12.91□□□□□ -0.34
SMARCB1-203ENST00000407082 FAM95CA0A1B0GW59 222 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 SLC7A4O43246 635 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 NPHS1O60500 1241 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 RAMP2O60895 175 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 PMPCBO75439 489 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 STC2O76061 302 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 RHOBTB1O94844 696 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 VAPBO95292 243 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 EPOP01588 193 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 RBP1P09455 135 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 TCF3P15923 654 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 HLA-DPA1P20036 260 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 SLC26A3P40879 764 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ALDH18A1P54886 795 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 CCINQ13939 588 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 POU6F1Q14863 301 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 POLD3Q15054 466 aaPredicted RBP12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 FAM83EQ2M2I3 478 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 PLK5Q496M5 336 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 TSTD2Q5T7W7 516 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 PIK3R6Q5UE93 754 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 AGAP9Q5VTM2 703 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 NEPROQ6NW34 567 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ZCCHC23Q6ZST2 131 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ACAD11Q709F0 780 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 CMC1Q7Z7K0 106 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ZNF354CQ86Y25 554 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 SCUBE1Q8IWY4 988 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 PPFIBP2Q8ND30 876 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 SPATA22Q8NHS9 363 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 RIN3Q8TB24 985 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 WBP2Q969T9 261 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 AZIN2Q96A70 460 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 PLD4Q96BZ4 506 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 MRGPRX2Q96LB1 330 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 MRPL57Q9BQC6 102 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ACE2Q9BYF1 805 aaPredicted RBP12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 DRC3Q9H069 523 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 TREX1Q9NSU2 369 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 NDE1Q9NXR1 346 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 BCAP29Q9UHQ4 241 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 FBXO5Q9UKT4 447 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 INVSQ9Y283 1065 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 NUP210Q8TEM1 1887 aaPredicted RBP12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 COL4A2P08572 1712 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 ATG2BQ96BY7 2078 aa12.9□□□□□ -0.34
SMARCB1-203ENST00000407082 E2F8A0AVK6 867 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 TRPC5OSA6NMA1 111 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 F5H5T6 163 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 G3V2L1 256 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 SCAMP3O14828 347 aaKnown RBP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 PFDN6O15212 129 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ITM2AO43736 263 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ATG13O75143 517 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 FKBP6O75344 327 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 TM7SF2O76062 418 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ZIC2O95409 532 aaPredicted RBP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 MT-CYBP00156 380 aaPredicted RBP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 AHSGP02765 367 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 FGF1P05230 155 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 CORO1AP31146 461 aaKnown RBP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ETFBP38117 255 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 SLC11A2P49281 568 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 IDH3AP50213 366 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 CSRP3P50461 194 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 RPL14P50914 215 aaKnown RBP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 COPAP53621 1224 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 DNAJB13P59910 316 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 FCHO2Q0JRZ9 810 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 GRSF1Q12849 480 aaKnown RBP eCLIP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 USP4Q13107 963 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 SEPT6Q14141 434 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 RCN2Q14257 317 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 CMPK2Q5EBM0 449 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 RABGAP1LQ5R372 815 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 DENND5AQ6IQ26 1287 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 KDELC1Q6UW63 502 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 RINLQ6ZS11 566 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 HTR3DQ70Z44 454 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 C14orf80Q86SX3 495 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 SLC22A9Q8IVM8 553 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ZNF683Q8IZ20 524 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 STYXQ8WUJ0 223 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 GATA6Q92908 595 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 IFT43Q96FT9 208 aa12.89□□□□□ -0.35
SMARCB1-203ENST00000407082 ELMO2Q96JJ3 720 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms