RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SCAMP4Q969E2 229 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 MLPHQ9BV36 600 aaPredicted RBP13.35□□□□□ -0.27
VCX3A-202ENST00000398729 LRRN3Q9H3W5 708 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 THSD1Q9NS62 852 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 APPL1Q9UKG1 709 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 PCDHGA8Q9Y5G5 932 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 ALG6Q9Y672 507 aa13.35□□□□□ -0.27
VCX3A-202ENST00000398729 BSNQ9UPA5 3926 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CCDC187A0A096LP49 1063 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 ANKRD66B4E2M5 251 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 B8ZZF3 427 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 D6RAR5 112 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 TMX2-CTNND1H3BSU7 103 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CASC3O15234 703 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 NUDT21O43809 227 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 LCA5LO95447 670 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 FUCA1P04066 466 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 RPLP0P05388 317 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CYLC1P35663 651 aaPredicted RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CDKN2BP42772 138 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 POLD2P49005 469 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 RHDQ02161 417 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 HLTFQ14527 1009 aaKnown RBP eCLIP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 QPCTQ16769 361 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 IGF2-ASQ6U949 168 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 NT5DC3Q86UY8 548 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CCNJLQ8IV13 435 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 EXD1Q8NHP7 514 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 WDR36Q8NI36 951 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 ZDHHC1Q8WTX9 485 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 SNRNP27Q8WVK2 155 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 AGAP3Q96P47 875 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 RIOK2Q9BVS4 552 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CEP41Q9BYV8 373 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 CDH19Q9H159 772 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 ASCL3Q9NQ33 180 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 SPATS2LQ9NUQ6 558 aaKnown RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 PKD2L2Q9NZM6 624 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 TAAR2Q9P1P5 351 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 LRIT1Q9P2V4 623 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 TMEM98Q9Y2Y6 226 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 PCDHA13Q9Y5I0 950 aa13.34□□□□□ -0.27
VCX3A-202ENST00000398729 UBR5O95071 2799 aaPredicted RBP13.34□□□□□ -0.27
VCX3A-202ENST00000398729 A0A0A6YYK5 440 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 A0A1W2PNU3 283 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 A0A1W2PQM1 296 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 RGSL1A5PLK6 1076 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 INPP4BO15327 924 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 CST8O60676 142 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 FGF1P05230 155 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 AK4P27144 223 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 ADCY8P40145 1251 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SPINT3P49223 89 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 PDX1P52945 283 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 EIF3IQ13347 325 aaKnown RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SLC14A2Q15849 920 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TAZQ16635 292 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TEX44Q53QW1 395 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TFDP3Q5H9I0 405 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 KAZNQ674X7 775 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 FOXR1Q6PIV2 292 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SLC30A9Q6PML9 568 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TRIM74Q86UV6 250 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 NRROSQ86YC3 692 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SFTPA2Q8IWL1 248 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 ARL14Q8N4G2 192 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 Q8N9G6 341 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 PTCD2Q8WV60 388 aaKnown RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TFB1MQ8WVM0 346 aaKnown RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 IMP4Q96G21 291 aaKnown RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SCARF2Q96GP6 870 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 LIN37Q96GY3 246 aaPredicted RBP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 COX14Q96I36 57 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 TMEM74Q96NL1 305 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SLC46A1Q96NT5 459 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 OR2M4Q96R27 311 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 AGAP2Q99490 1192 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 STRADBQ9C0K7 418 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SLC25A51Q9H1U9 297 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.33□□□□□ -0.28
VCX3A-202ENST00000398729 RNF215Q9Y6U7 377 aa13.33□□□□□ -0.28
VCX3A-202ENST00000398729 ARHGEF17Q96PE2 2063 aaPredicted RBP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ZW10O43264 779 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ZRANB2O95218 330 aaKnown RBP eCLIP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 IPO7O95373 1038 aaKnown RBP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ASMTLO95671 621 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ACTR1BP42025 376 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 MLLT3P42568 568 aaPredicted RBP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ZNF75DP51815 510 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 INHBCP55103 352 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 MAZP56270 477 aaKnown RBP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 TMPRSS3P57727 454 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 ACTR1AP61163 376 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 CTBSQ01459 385 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 BIRC2Q13490 618 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 GALNT3Q14435 633 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 PRKD1Q15139 912 aaPredicted RBP13.32□□□□□ -0.28
VCX3A-202ENST00000398729 LLGL1Q15334 1064 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 PCSK7Q16549 785 aa13.32□□□□□ -0.28
VCX3A-202ENST00000398729 CCDC70Q6NSX1 233 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms