RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 KCTD5Q9NXV2 234 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 UVRAGQ9P2Y5 699 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 PCDHGA7Q9Y5G6 932 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 OAS3Q9Y6K5 1087 aaKnown RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 TMX2-CTNND1H3BSU7 103 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 PPM1DO15297 605 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 EML2O95834 649 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 JCHAINP01591 159 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 ATP1A1P05023 1023 aaKnown RBP16.49■□□□□ 0.23
PTPRK-208ENST00000392449 MMP2P08253 660 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 KDELR1P24390 212 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 MPSTP25325 297 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 TEAD1P28347 426 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 CD86P42081 329 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 RHDQ02161 417 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 CFHR1Q03591 330 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 ZBTB17Q13105 803 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF438Q7Z4V0 828 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 SNRNP27Q8WVK2 155 aaKnown RBP16.49■□□□□ 0.23
PTPRK-208ENST00000392449 USP7Q93009 1102 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 PMEPA1Q969W9 287 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 SCARF2Q96GP6 870 aaPredicted RBP16.49■□□□□ 0.23
PTPRK-208ENST00000392449 OR2M4Q96R27 311 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 WDR24Q96S15 920 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 PCDH9Q9HC56 1237 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 SPTLC3Q9NUV7 552 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.49■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF462Q96JM2 2506 aa16.49■□□□□ 0.23
PTPRK-208ENST00000392449 LRRD1A4D1F6 860 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 C9orf172C9J069 976 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CPNE6O95741 557 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 KRT7P08729 469 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CCL4P13236 92 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CD1CP29017 333 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 PYCR3Q53H96 274 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 NPNTQ6UXI9 565 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 VASH2Q86V25 355 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 PIM3Q86V86 326 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 ZFAND4Q86XD8 727 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CCDC13Q8IYE1 715 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 NDUFAF2Q8N183 169 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 PLD5Q8N7P1 536 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CNTD1Q8N815 330 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 LSM14AQ8ND56 463 aaKnown RBP16.48■□□□□ 0.23
PTPRK-208ENST00000392449 HDAC11Q96DB2 347 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 RNF157Q96PX1 679 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CCNL2Q96S94 520 aaPredicted RBP16.48■□□□□ 0.23
PTPRK-208ENST00000392449 DNAJC7Q99615 494 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CHP1Q99653 195 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CDH19Q9H159 772 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 DEF6Q9H4E7 631 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 TMEM9Q9P0T7 183 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 HEY1Q9Y5J3 304 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 PIEZO2Q9H5I5 2752 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 IGHV5-10-1A0A0J9YXX1 117 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 C1orf232A0A0U1RR37 186 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 C3orf70A6NLC5 250 aaPredicted RBP16.48■□□□□ 0.23
PTPRK-208ENST00000392449 FADS2P1A8MWK0 482 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 ASMTLO95671 621 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF30P17039 623 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CSF2RBP32927 897 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 BIRC2Q13490 618 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 GALNT3Q14435 633 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 NR1D2Q14995 579 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 QPCTQ16769 361 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF765Q7L2R6 523 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 KDELC2Q7Z4H8 507 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 MAP7D3Q8IWC1 876 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 OR8K1Q8NGG5 319 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 SLC35G2Q8TBE7 412 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 FATE1Q969F0 183 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 COX14Q96I36 57 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CCDC74BQ96LY2 380 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CMKLR1Q99788 373 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 ARFGAP3Q9NP61 516 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 CNOT6Q9ULM6 557 aaKnown RBP16.48■□□□□ 0.23
PTPRK-208ENST00000392449 HYOU1Q9Y4L1 999 aa16.48■□□□□ 0.23
PTPRK-208ENST00000392449 NVLO15381 856 aaKnown RBP16.47■□□□□ 0.23
PTPRK-208ENST00000392449 TMEM253P0C7T8 217 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 PIRTP0C851 137 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 MX2P20592 715 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 MAN1A1P33908 653 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 GALNT13Q8IUC8 556 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 EXD1Q8NHP7 514 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 JPH3Q8WXH2 748 aaPredicted RBP16.47■□□□□ 0.23
PTPRK-208ENST00000392449 EID2BQ96D98 161 aa16.47■□□□□ 0.23
PTPRK-208ENST00000392449 SDK2Q58EX2 2172 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 IGHV1OR21-1A0A087WYE8 117 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 AKR1B10O60218 316 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 DNAJC6O75061 913 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 SLC4A1P02730 911 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 TNNT1P13805 278 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 PLA2G2AP14555 144 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 WT1P19544 449 aaPredicted RBP16.46■□□□□ 0.23
PTPRK-208ENST00000392449 SPINT3P49223 89 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 PPIDQ08752 370 aaKnown RBP16.46■□□□□ 0.23
PTPRK-208ENST00000392449 AP1B1Q10567 949 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF648Q5T619 568 aaPredicted RBP16.46■□□□□ 0.23
PTPRK-208ENST00000392449 LYSMD3Q7Z3D4 306 aa16.46■□□□□ 0.23
PTPRK-208ENST00000392449 BOD1L1Q8NFC6 3051 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms