RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 AKAP10O43572 662 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CLASP2O75122 1294 aaKnown RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 ADAMTS4O75173 837 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 RHOBTB1O94844 696 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 MT-CO1P00395 513 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 RPS17P08708 135 aaKnown RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 CAPN3P20807 821 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CD9P21926 228 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ACVRL1P37023 503 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ZNF140P52738 457 aaPredicted RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 PRKCQQ04759 706 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CLCQ05315 142 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SEMA3AQ14563 771 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 RPS6KA2Q15349 733 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 KCTD21Q4G0X4 260 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 NHSL2Q5HYW2 709 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ANKS6Q68DC2 871 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 BLOC1S3Q6QNY0 202 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 AMIGO2Q86SJ2 522 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ZNF280BQ86YH2 543 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 RASAL3Q86YV0 1011 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SLC15A3Q8IY34 581 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 COLGALT2Q8IYK4 626 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 NKAPQ8N5F7 415 aaKnown RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 CANT1Q8WVQ1 401 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 TUBGCP3Q96CW5 907 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CDKN2AIPNLQ96HQ2 116 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SPATA17Q96L03 361 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 TRIB3Q96RU7 358 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SLC29A1Q99808 456 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CIB1Q99828 191 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CCT7Q99832 543 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 MGME1Q9BQP7 344 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 MAGEH1Q9H213 219 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 CCDC68Q9H2F9 335 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ZFYVE28Q9HCC9 887 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 TIMMDC1Q9NPL8 285 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 TUBA8Q9NY65 449 aaPredicted RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 ATXN10Q9UBB4 475 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SEPT3Q9UH03 358 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 POLG2Q9UHN1 485 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 RNF112Q9ULX5 631 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 SLC8A2Q9UPR5 921 aa14.24□□□□□ -0.13
CD48-201ENST00000368045 ARIH1Q9Y4X5 557 aaPredicted RBP14.24□□□□□ -0.13
CD48-201ENST00000368045 TDRD15B5MCY1 1934 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 MYO16Q9Y6X6 1858 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SUPT3HB4E1H0 165 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 FXYD1O00168 92 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 MUSKO15146 869 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 B4GALT3O60512 393 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SUPT3HO75486 399 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SIX3O95343 332 aaPredicted RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 MLYCDO95822 493 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 GPIP06744 558 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 ASGR1P07306 291 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 PRR35P0CG20 571 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 HGFP14210 728 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TACR2P21452 398 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 PSMA4P25789 261 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 EEF1DP29692 281 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 GRK4P32298 578 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 RPS6KA3P51812 740 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 HUNKP57058 714 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 GRB7Q14451 532 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 VPS26BQ4G0F5 336 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TBCELQ5QJ74 424 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 VARS2Q5ST30 1063 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 ARHGAP22Q7Z5H3 698 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 MIB1Q86YT6 1006 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SPNS2Q8IVW8 549 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TRIML2Q8N7C3 387 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 PNPLA1Q8N8W4 532 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SNX31Q8N9S9 440 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TNIP2Q8NFZ5 429 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 OR13C4Q8NGS5 318 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 SH3RF2Q8TEC5 729 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TFAP2CQ92754 450 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 TUBB1Q9H4B7 451 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 CLK4Q9HAZ1 481 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 AGPAT4Q9NRZ5 378 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 PTBP2Q9UKA9 531 aaKnown RBP14.23□□□□□ -0.13
CD48-201ENST00000368045 CEPT1Q9Y6K0 416 aa14.23□□□□□ -0.13
CD48-201ENST00000368045 KANSL1LA0AUZ9 987 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 KLHL33A6NCF5 533 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 PFDN6O15212 129 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 KLK8O60259 260 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 CRCPO75575 148 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 TIPRLO75663 272 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 SOAT2O75908 522 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 BMP10O95393 424 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 TBX18O95935 607 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 CHEK2O96017 543 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 PYGLP06737 847 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 FGFR3P22607 806 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 CES1P23141 567 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 SLC6A2P23975 617 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 CST5P28325 142 aaPredicted RBP14.22□□□□□ -0.13
CD48-201ENST00000368045 OR1G1P47890 313 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 NME5P56597 212 aa14.22□□□□□ -0.13
CD48-201ENST00000368045 FAM189BP81408 668 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms