RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PDE1CQ14123 709 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-203ENST00000354098 CHRNA6Q15825 494 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 TSTD2Q5T7W7 516 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 HEATR4Q86WZ0 1026 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 BBOF1Q8ND07 529 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 STYXQ8WUJ0 223 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 TRIM56Q9BRZ2 755 aaKnown RBP22.04■■□□□ 1.12
SHMT1-203ENST00000354098 CDH19Q9H159 772 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 SUDS3Q9H7L9 328 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-203ENST00000354098 CAAP1Q9H8G2 361 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 GPR27Q9NS67 375 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 CNOT6Q9ULM6 557 aaKnown RBP22.04■■□□□ 1.12
SHMT1-203ENST00000354098 SNX11Q9Y5W9 270 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 OTOGLQ3ZCN5 2332 aa22.04■■□□□ 1.12
SHMT1-203ENST00000354098 LAMA1P25391 3075 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 GLYATL1P3A0A0U1RQE8 302 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 SDR42E2A6NKP2 422 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 INPP4BO15327 924 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 CA5AP35218 305 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 ARSDP51689 593 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 NXPH1P58417 271 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 YPEL5P62699 121 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 XIAPP98170 497 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 OVGP1Q12889 678 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 GRIK2Q13002 908 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 CALCOCO2Q13137 446 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 GLE1Q53GS7 698 aaKnown RBP22.03■■□□□ 1.12
SHMT1-203ENST00000354098 PRAMEF14Q5SWL7 426 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 CES3Q6UWW8 571 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 TRAM1L1Q8N609 369 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 OR13J1Q8NGT2 312 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 FAM174AQ8TBP5 190 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 SIGLEC10Q96LC7 697 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 TEX101Q9BY14 249 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 WDR26Q9H7D7 661 aa22.03■■□□□ 1.12
SHMT1-203ENST00000354098 BHMG1C9JSJ3 638 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A9O60656 530 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A6P19224 532 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A1P22309 533 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A4P22310 534 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 NMBRP28336 390 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A3P35503 534 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A5P35504 534 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 CDK3Q00526 305 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 PEX6Q13608 980 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 ATP13A5Q4VNC0 1218 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 ZDHHC20Q5W0Z9 365 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 CASC4Q6P4E1 433 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 ADAMTSL4Q6UY14 1074 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 TRIM74Q86UV6 250 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 SEC14L1Q92503 715 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 SKA1Q96BD8 255 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 CDKN2AIPNLQ96HQ2 116 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 TBATAQ96M53 351 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 ZSCAN5AQ9BUG6 496 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 KIFC1Q9BW19 673 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 NUSAP1Q9BXS6 441 aaKnown RBP22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A7Q9HAW7 530 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A10Q9HAW8 530 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 UGT1A8Q9HAW9 530 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 EPB41L5Q9HCM4 733 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 TMPRSS11EQ9UL52 423 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 BPTFQ12830 3046 aa22.02■■□□□ 1.12
SHMT1-203ENST00000354098 SMAPO00193 183 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 PSMA3P25788 255 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 HADHAP40939 763 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 CTSKP43235 329 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 THOP1P52888 689 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 DRG2P55039 364 aaKnown RBP22.01■■□□□ 1.11
SHMT1-203ENST00000354098 PLTPP55058 493 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 DHX9Q08211 1270 aaKnown RBP22.01■■□□□ 1.11
SHMT1-203ENST00000354098 LAMB3Q13751 1172 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 CSRP2Q16527 193 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 SKIDA1Q1XH10 827 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 ZDHHC24Q6UX98 284 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 ART4Q93070 314 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 MFSD3Q96ES6 412 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 PNMA8BQ9ULN7 279 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-203ENST00000354098 SOX13Q9UN79 622 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 DNAH14Q0VDD8 3507 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 SPTY2D1-AS1A0A0U1RR47 76 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 LNP1A1A4G5 178 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 TMEM202A6NGA9 273 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 ARHGAP33O14559 1287 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 PRAMEF1O95521 474 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 ENGP17813 658 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 TEAD1P28347 426 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 FZD2Q14332 565 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 BBS9Q3SYG4 887 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 HP1BP3Q5SSJ5 553 aaPredicted RBP22.01■■□□□ 1.11
SHMT1-203ENST00000354098 KCTD16Q68DU8 428 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 NLRP9Q7RTR0 991 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 OR2I1PQ8NGU4 316 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 HIC2Q96JB3 615 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 C19orf43Q9BQ61 176 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 ARFGAP3Q9NP61 516 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 RXFP3Q9NSD7 469 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 TREX1Q9NSU2 369 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 MAD1L1Q9Y6D9 718 aa22.01■■□□□ 1.11
SHMT1-203ENST00000354098 PI4KAP42356 2102 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms