RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DNAJA2O60884 412 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 EEF1DP29692 281 aaKnown RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 CORO1AP31146 461 aaKnown RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TCTN1Q2MV58 587 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 FBXO48Q5FWF7 155 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 HECTD3Q5T447 861 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 GKN1Q9NS71 199 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 AGO1Q9UL18 857 aaKnown RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 PCDHGC4Q9Y5F7 938 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 C15orf38-AP3S2A0A0A6YYH1 394 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 RAD51Q06609 339 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 ZNF177Q13360 481 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 CYTH1Q15438 398 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TSNQ15631 228 aaKnown RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 C8orf82Q6P1X6 216 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 ARPINQ7Z6K5 226 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 FBXO39Q8N4B4 442 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 MARVELD2Q8N4S9 558 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TMEM102Q8N9M5 508 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-202ENST00000352886 CD99L2Q8TCZ2 262 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TOP1MTQ969P6 601 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 GPR21Q99679 349 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TUBB1Q9H4B7 451 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 Q9H521 79 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 RETREG1Q9H6L5 497 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 TMEM181Q9P2C4 612 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 CD300AQ9UGN4 299 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 A0A0J9YYE9 177 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 A0A1B0GTL3 188 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 LCHNA4D1U4 455 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 FESP07332 822 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 C8BP07358 591 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 OR1D2P34982 312 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 CLCQ05315 142 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 GRB7Q14451 532 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 HACD2Q6Y1H2 254 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 TMEM175Q9BSA9 504 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 SEMA4BQ9NPR2 832 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-202ENST00000352886 RAB26Q9ULW5 256 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 ILVBLA1L0T0 632 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 NR5A2O00482 541 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 TSPAN3O60637 253 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 STC2O76061 302 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 PTPRNQ16849 979 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 SAMD4BQ5PRF9 694 aaKnown RBP21.68■■□□□ 1.06
SHMT1-202ENST00000352886 C16orf59Q7L2K0 433 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 PDZD8Q8NEN9 1154 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 PIP4K2CQ8TBX8 421 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 ZNF483Q8TF39 744 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-202ENST00000352886 SEPT8Q92599 483 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 TCF12Q99081 682 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 MRPL9Q9BYD2 267 aaKnown RBP21.68■■□□□ 1.06
SHMT1-202ENST00000352886 GALPQ9UBC7 116 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 BTRCQ9Y297 605 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 FNDC3AQ9Y2H6 1198 aaKnown RBP21.68■■□□□ 1.06
SHMT1-202ENST00000352886 AP4S1Q9Y587 144 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 RAI2Q9Y5P3 530 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 AP4B1Q9Y6B7 739 aa21.68■■□□□ 1.06
SHMT1-202ENST00000352886 CDC7O00311 574 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 AOC2O75106 756 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 ECI2O75521 394 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 IRF1P10914 325 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 SLC7A2P52569 658 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 ATP6V0D1P61421 351 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 RHDQ02161 417 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 TRAP1Q12931 704 aaKnown RBP21.67■■□□□ 1.06
SHMT1-202ENST00000352886 LCP2Q13094 533 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 LIN52Q52LA3 116 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 SLC8B1Q6J4K2 584 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 PSAPL1Q6NUJ1 521 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 CYP2R1Q6VVX0 501 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 RETREG3Q86VR2 466 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 PHYKPLQ8IUZ5 450 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 GALNT4Q8N4A0 578 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 TUBGCP3Q96CW5 907 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 BIRC8Q96P09 236 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 CENPKQ9BS16 269 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 AHCYL1O43865 530 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 CAPNS1P04632 268 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 LINC00032P0C843 101 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 LPOP22079 712 aaPredicted RBP21.67■■□□□ 1.06
SHMT1-202ENST00000352886 HOXD10P28358 340 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 TUFMP49411 452 aaKnown RBP21.67■■□□□ 1.06
SHMT1-202ENST00000352886 BIRC2Q13490 618 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 BFSP2Q13515 415 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 PIANPQ8IYJ0 282 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 EFHBQ8N7U6 833 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 PCYOX1LQ8NBM8 494 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 PLD4Q96BZ4 506 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 MUC3BQ9H195 1237 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 POLG2Q9UHN1 485 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 FKBPLQ9UIM3 349 aa21.67■■□□□ 1.06
SHMT1-202ENST00000352886 A0A1B0GVM2 712 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 NPEPPSL1A6NEC2 478 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 NCF1BA6NI72 391 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 NCF1CA8MVU1 366 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 NCF1P14598 390 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 GRIA2P42262 883 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 C6orf10Q5SRN2 563 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 268 ms