RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C2orf81A6NN90 581 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MRASO14807 208 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 STX7O15400 261 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TMCC1O94876 653 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MTHFD2P13995 350 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 HMGA1P17096 107 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 CASP2P42575 452 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TRAF2Q12933 501 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TXNDC8Q6A555 127 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 RAB44Q7Z6P3 723 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 SETD3Q86TU7 594 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PELI3Q8N2H9 469 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 WFDC5Q8TCV5 224 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ATP6V1E2Q96A05 226 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TRIB3Q96RU7 358 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 DTNAQ9Y4J8 743 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MAGEA13PA6NCF6 341 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 KDELR3O43731 214 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TUFMP49411 452 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 KPNA1P52294 538 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ARF5P84085 180 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 VPS26BQ4G0F5 336 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 LRRC43Q8N309 656 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 FBXO39Q8N4B4 442 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ARL14EPQ8N8R7 260 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TWIST2Q8WVJ9 160 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CDK15Q96Q40 435 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TSEN34Q9BSV6 310 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TDRD1Q9BXT4 1180 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ABCG8Q9H221 673 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ELAC1Q9H777 363 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TAS2R13Q9NYV9 303 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 PRPF19Q9UMS4 504 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TRIM17Q9Y577 477 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TRIOO75962 3097 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 NRG2O14511 850 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CLDN11O75508 207 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ECI2O75521 394 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CES1P23141 567 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF140P52738 457 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 STX1BP61266 288 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CAPRIN1Q14444 709 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 RPS6KA2Q15349 733 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 SLC14A2Q15849 920 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 C18orf21Q32NC0 220 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CPNE9Q8IYJ1 553 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 LILRA2Q8N149 483 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 GATA6Q92908 595 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ACOX2Q99424 681 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 PKP2Q99959 881 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CACNA2D2Q9NY47 1150 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 MED16Q9Y2X0 877 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ASB1Q9Y576 335 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 PCDHGA7Q9Y5G6 932 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 DOCK6Q96HP0 2047 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 E5RI56 91 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 GJA1P17302 382 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 DNAJB1P25685 340 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 HK2P52789 917 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 RHOAP61586 193 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 YBX1P67809 324 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 MED21Q13503 144 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 SQLEQ14534 574 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ADGRF1Q5T601 910 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 UGT3A1Q6NUS8 523 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TPGS1Q6ZTW0 290 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 CAMK1DQ8IU85 385 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 ICA1LQ8NDH6 482 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 EEF1AKMT1Q8WVE0 214 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 LPGAT1Q92604 370 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 MRPL9Q9BYD2 267 aaKnown RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 TLR9Q9NR96 1032 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 NLE1Q9NVX2 485 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-201ENST00000341247 PSMD13Q9UNM6 376 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 YIPF1Q9Y548 306 aa10.3□□□□□ -0.76
LIMA1-201ENST00000341247 MYOCOSA0A1B0GUC4 107 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 ANKRD66B4E2M5 251 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 AZIN1O14977 448 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 SNRPB2P08579 225 aaKnown RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 VCLP18206 1134 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 SLC7A2P52569 658 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 RAD51Q06609 339 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 RBBP7Q16576 425 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 SETMARQ53H47 684 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CMPK2Q5EBM0 449 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 IL23RQ5VWK5 629 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CLYBLQ8N0X4 340 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF296Q8WUU4 475 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PPP2R3CQ969Q6 453 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 IGSF21Q96ID5 467 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FAR2Q96K12 515 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 ATOH8Q96SQ7 321 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 C1orf50Q9BV19 199 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 MTRRQ9UBK8 725 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PCDHGB4Q9UN71 923 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PHF24Q9UPV7 400 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PCDHGB5Q9Y5G0 923 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 A0A1B0GVM2 712 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PRORSD1PA6NEY8 169 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 LIN7AO14910 233 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms