RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PIAS2O75928 621 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 CRTAMO95727 393 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 LPOP22079 712 aaPredicted RBP15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 SPAM1P38567 509 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 GRIA1P42261 906 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 SRP54P61011 504 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 MSLNQ13421 630 aaPredicted RBP15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 PTPRCAPQ14761 206 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 POU6F1Q14863 301 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 PPP1R7Q15435 360 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 DOK6Q6PKX4 331 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 TRAM1L1Q8N609 369 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 OR4K2Q8NGD2 314 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 PDXPQ96GD0 296 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 HIC2Q96JB3 615 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 PLEKHG4BQ96PX9 1271 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 SLC13A1Q9BZW2 595 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 TCEAL2Q9H3H9 227 aaPredicted RBP15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 FGF22Q9HCT0 170 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 EIF2B3Q9NR50 452 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 DLL3Q9NYJ7 618 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 MOSPD1Q9UJG1 213 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 BTBD3Q9Y2F9 522 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 NEU2Q9Y3R4 380 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 KCTD3Q9Y597 815 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 DNAH14Q0VDD8 3507 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 DCDC2BA2VCK2 349 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 TM4SF5O14894 197 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 SCAMP1O15126 338 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 RASGRP1O95267 797 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 DGKAP23743 735 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 ID4P47928 161 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 PDE1BQ01064 536 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 TCEA2Q15560 299 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 INAVAQ3KP66 663 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 ZDHHC20Q5W0Z9 365 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 KCTD16Q68DU8 428 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 FAM151BQ6UXP7 276 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 PIP4P1Q86T03 277 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 ZNF548Q8NEK5 533 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 DEFB124Q8NES8 71 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 BTN2A2Q8WVV5 523 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 OR1E3Q8WZA6 343 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 CAMK1GQ96NX5 476 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 SUDS3Q9H7L9 328 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 MRPL40Q9NQ50 206 aaKnown RBP15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 UCKL1Q9NWZ5 548 aa15.79■□□□□ 0.12
CCDC28A-201ENST00000332797 LRP4O75096 1905 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 GLYATL1P3A0A0U1RQE8 302 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PRSS38A1L453 326 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CCDC188H7C350 402 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TNFRSF10CO14798 259 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PPFIA2O75334 1257 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TPSB2P20231 275 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 KCNA4P22459 653 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 DEKP35659 375 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 GRK6P43250 576 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 POLD2P49005 469 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 BLKP51451 505 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ZNF140P52738 457 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 HK3P52790 923 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TMPRSS15P98073 1019 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PUM1Q14671 1186 aaKnown RBP eCLIP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TPSAB1Q15661 275 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PRRT3Q5FWE3 981 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CERCAMQ5T4B2 595 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 KANSL1Q7Z3B3 1105 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 OR13C4Q8NGS5 318 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 LMX1AQ8TE12 382 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 RHBDD1Q8TEB9 315 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ZNF592Q92610 1267 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 COX14Q96I36 57 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 LRRC61Q9BV99 259 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 FRMD8Q9BZ67 464 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 SLC32A1Q9H598 525 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CYP4F12Q9HCS2 524 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 IL26Q9NPH9 171 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CASS4Q9NQ75 786 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 SPASTQ9UBP0 616 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PCYOX1Q9UHG3 505 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 FKBPLQ9UIM3 349 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CNOT6Q9ULM6 557 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TMEM98Q9Y2Y6 226 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 BPTFQ12830 3046 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ASCC3Q8N3C0 2202 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TCRBV7S3A2A0A539 114 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 FFAR2O15552 330 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 AQP9O43315 295 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 LDB2O43679 373 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ASMTLO95671 621 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 TNFP01375 233 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CEACAM5P06731 702 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CTSEP14091 401 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 DR1Q01658 176 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 C1orf61Q13536 156 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 KCNJ11Q14654 390 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CHRNA6Q15825 494 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ATP13A5Q4VNC0 1218 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CCDC38Q502W7 563 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms