RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 FTHL17Q9BXU8 183 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 PDGFDQ9GZP0 370 aaPredicted RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 CPA4Q9UI42 421 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 FAM86C2PA6NEL3 165 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 TRAPPC6AO75865 159 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 ALDH4A1P30038 563 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 CDH5P33151 784 aaPredicted RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 TBX2Q13207 712 aaPredicted RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 SEC23AQ15436 765 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 FSCN1Q16658 493 aaKnown RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 ZNF549Q6P9A3 640 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 ADAMTSL2Q86TH1 951 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 RASGRP3Q8IV61 690 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 SYNPOQ8N3V7 929 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 HEXDCQ8WVB3 486 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 C16orf58Q96GQ5 468 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 ZNF184Q99676 751 aaPredicted RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 NOL4O94818 638 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 CCNDBP1O95273 360 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 GLI1P08151 1106 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 TUBG1P23258 451 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 GPD2P43304 727 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 SLC6A9P48067 706 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 NFKB2Q00653 900 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 APTXQ7Z2E3 356 aaKnown RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 TMC8Q8IU68 726 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 FBXL16Q8N461 479 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 SEMA6AQ9H2E6 1030 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 ELAC1Q9H777 363 aaKnown RBP12.04□□□□□ -0.48
PCF11-201ENST00000298281 GRIN2DO15399 1336 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 NRCAMQ92823 1304 aa12.04□□□□□ -0.48
PCF11-201ENST00000298281 SIGLEC16A6NMB1 481 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 DDX3YO15523 660 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 ERBB2P04626 1255 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SSTR1P30872 391 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SSTP61278 116 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 TOR1AIP1Q5JTV8 583 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 HECTD3Q5T447 861 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PIWIL2Q8TC59 973 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 ZNF398Q8TD17 642 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 LMLNQ96KR4 655 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 C8orf48Q96LL4 319 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 LACTBL1A8MY62 500 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SNAP91O60641 907 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 ALPPL2P10696 532 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 RPP38P78345 283 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 SLC10A7Q0GE19 358 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 CDK10Q15131 360 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 RUNDC3AQ59EK9 446 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 FAM46CQ5VWP2 391 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 OTOP1Q7RTM1 612 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SYVN1Q86TM6 617 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SLC22A15Q8IZD6 547 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 OR2AJ1Q8NGZ0 328 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PSMA8Q8TAA3 256 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 KLHL15Q96M94 604 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 MORF4L1Q9UBU8 362 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 FBXO9Q9UK97 447 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 GNEQ9Y223 722 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 SCGB2A1O75556 95 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PPM1BO75688 479 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 TOB1P50616 345 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 DPYSL3Q14195 570 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 MAPKAPK3Q16644 382 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PHYKPLQ8IUZ5 450 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 MAP4K3Q8IVH8 894 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 INO80EQ8NBZ0 244 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 COMMD4Q9H0A8 199 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.03□□□□□ -0.485e-9■■■■■ 38.6
PCF11-201ENST00000298281 POLLQ9UGP5 575 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 USP32Q8NFA0 1604 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 TFECO14948 347 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 IL1R1P14778 569 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 ATF4P18848 351 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 PIWIL4Q7Z3Z4 852 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 C2orf73Q8N5S3 287 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 ZSCAN4Q8NAM6 433 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 IRGMA1A4Y4 181 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PDCD5O14737 125 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SSX5O60225 188 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 RLN2P04090 185 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 DCKP27707 260 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 CDH11P55287 796 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 LSM12Q3MHD2 195 aaKnown RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 SLC39A12Q504Y0 691 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 LACTB2Q53H82 288 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 GRHL2Q6ISB3 625 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 ZNF709Q8N972 641 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 ZBTB8BQ8NAP8 495 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 SENP8Q96LD8 212 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 UPB1Q9UBR1 384 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 TIMM13Q9Y5L4 95 aaPredicted RBP12.03□□□□□ -0.48
PCF11-201ENST00000298281 AHCYL1O43865 530 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SERPINB7O75635 380 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 PIGNO95427 931 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 SLC35G4P0C7Q5 338 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 GNB3P16520 340 aa12.03□□□□□ -0.48
PCF11-201ENST00000298281 S100A12P80511 92 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms