RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 KLF1Q13351 362 aaPredicted RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 GDF6Q6KF10 455 aaPredicted RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 NCCRP1Q6ZVX7 275 aaPredicted RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 HDDC2Q7Z4H3 204 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 C19orf60Q96EN9 201 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 TSPAN18Q96SJ8 248 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 TPK1Q9H3S4 243 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 GNG14A0A1W2PPG7 69 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 GSTM1P09488 218 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 SLC7A1P30825 629 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 MTHFRP42898 656 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 COPZ1P61923 177 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHH-201ENST00000297261 CA9Q16790 459 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 INO80DQ53TQ3 878 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 ZYG11AQ6WRX3 759 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 HDAC10Q969S8 669 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 MTFMTQ96DP5 389 aaKnown RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 TMEM169Q96HH4 297 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 NODALQ96S42 347 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 GABRQQ9UN88 632 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 ARL5CA6NH57 179 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 H3BN98 237 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 CD3EAPO15446 510 aaKnown RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 ZBTB24O43167 697 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 HOXA2O43364 376 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 TBX1O43435 398 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 TUSC3Q13454 348 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 MADCAM1Q13477 382 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 TRIP4Q15650 581 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 NOMO2Q5JPE7 1267 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 CHST15Q7LFX5 561 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 RAB2BQ8WUD1 216 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 RSPH1Q8WYR4 309 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 KLHL32Q96NJ5 620 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 PLK2Q9NYY3 685 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 KLHL20Q9Y2M5 609 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 Q9Y3F1 56 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 PCDHB5Q9Y5E4 795 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 QSER1Q2KHR3 1735 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 SLC22A3O75751 556 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 IDO1P14902 403 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 ZNF182P17025 639 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 MZF1P28698 734 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 CAPGP40121 348 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 ATXN1P54253 815 aaKnown RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 CLDN10P78369 228 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 ECT2LQ008S8 904 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 MYBPC3Q14896 1274 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 SIX1Q15475 284 aaPredicted RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 ZFP69Q49AA0 526 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 CPSF7Q8N684 471 aaKnown RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 WBP11Q9Y2W2 641 aaKnown RBP15.32■□□□□ 0.04
SHH-201ENST00000297261 PHIPQ8WWQ0 1821 aa15.32■□□□□ 0.04
SHH-201ENST00000297261 MYH9P35579 1960 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 TMEM233B4DJY2 109 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 HCRTO43612 131 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 TMCC2O75069 709 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 IRF1P10914 325 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 GRK3P35626 688 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 TIMM50Q3ZCQ8 353 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 RNF219Q5W0B1 726 aaPredicted RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 RELL1Q8IUW5 271 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 OR2T12Q8NG77 320 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 REXO5Q96IC2 774 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 HBEGFQ99075 208 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 SAMHD1Q9Y3Z3 626 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 MGAT4DA6NG13 374 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 FGFR1P11362 822 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 CYP3A5P20815 502 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 KRT33BQ14525 404 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 AARS2Q5JTZ9 985 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 KLHL35Q6PF15 583 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 LDB1Q86U70 411 aaPredicted RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 SCAIQ8N9R8 606 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 FEM1AQ9BSK4 669 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ADGRE2Q9UHX3 823 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ZBTB42B2RXF5 422 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ANGPTL1O95841 491 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 PENKP01210 267 aaPredicted RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 TKTP29401 623 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 CD86P42081 329 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 TRIM32Q13049 653 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ZNF829Q3KNS6 432 aaPredicted RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 OTOP3Q7RTS5 596 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 RBM12BQ8IXT5 1001 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 CENPSQ8N2Z9 138 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 TMEM132CQ8N3T6 1108 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ATP6V0D2Q8N8Y2 350 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 LPCAT1Q8NF37 534 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 KBTBD8Q8NFY9 601 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ARHGAP39Q9C0H5 1083 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ABCG8Q9H221 673 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ALG2Q9H553 416 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 DYRK4Q9NR20 520 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 SIRPGQ9P1W8 387 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 C2CD4BA6NLJ0 364 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 LOC110117498-PIK3R3F6TDL0 507 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 CNPP09543 421 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 ZNF865P0CJ78 1059 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms