RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 VPS26AO75436 327 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 ME2P23368 584 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 ATP4BP51164 291 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 FBXO39Q8N4B4 442 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 NKAPQ8N5F7 415 aaKnown RBP23.85■■□□□ 1.41
TRIM54-201ENST00000296098 UCMAQ8WVF2 138 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 RNF208Q9H0X6 261 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 ZNF334Q9HCZ1 680 aaPredicted RBP23.85■■□□□ 1.41
TRIM54-201ENST00000296098 BPIFA1Q9NP55 256 aa23.85■■□□□ 1.41
TRIM54-201ENST00000296098 MT-CO1P00395 513 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 FGF4P08620 206 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 PKMP14618 531 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 CDH18Q13634 790 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 TSNQ15631 228 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 GEN1Q17RS7 908 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ZRANB3Q5FWF4 1079 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 AARS2Q5JTZ9 985 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 REP15Q6BDI9 236 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 TCEAL8Q8IYN2 117 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 GDPD5Q8WTR4 605 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 MIEF2Q96C03 454 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 NSUN5Q96P11 429 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 VPS51Q9UID3 782 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 IKZF3Q9UKT9 509 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 FNDC3AQ9Y2H6 1198 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 FCF1Q9Y324 198 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 DNAJC15Q9Y5T4 150 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ATP6AP2A0A1C7CYW4 349 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 SYCE1LA8MT33 242 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 STX16-NPEPL1H3BU86 382 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 AZIN1O14977 448 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 CLASP2O75122 1294 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ECI2O75521 394 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ATP6AP2O75787 350 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 EEF1DP29692 281 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 CSKP41240 450 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 APLP1P51693 650 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 MMEL1Q495T6 779 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 KANK2Q63ZY3 851 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 FAM117BQ6P1L5 589 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ADAMTS19Q8TE59 1207 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 AUTS2Q8WXX7 1259 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 ZNF689Q96CS4 500 aaPredicted RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 C3orf30Q96M34 536 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 TOX2Q96NM4 488 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 CCDC167Q9P0B6 97 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 TRMT6Q9UJA5 497 aaKnown RBP23.84■■□□□ 1.41
TRIM54-201ENST00000296098 OR51B4Q9Y5P0 310 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 LTBP2Q14767 1821 aa23.84■■□□□ 1.41
TRIM54-201ENST00000296098 NPEPPSL1A6NEC2 478 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 H7C0S8 307 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 CCL5P13501 91 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 STX1BP61266 288 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 PTPRRQ15256 657 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 GSTA3Q16772 222 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 CTSL3PQ5NE16 218 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 Q6ZNB5 142 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 TMCO2Q7Z6W1 182 aaPredicted RBP23.83■■□□□ 1.41
TRIM54-201ENST00000296098 MFN1Q8IWA4 741 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 ARL14EPQ8N8R7 260 aaPredicted RBP23.83■■□□□ 1.41
TRIM54-201ENST00000296098 DCAF4L2Q8NA75 395 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 TWIST2Q8WVJ9 160 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 TOP1MTQ969P6 601 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 KLHL4Q9C0H6 718 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 CACNA2D2Q9NY47 1150 aa23.83■■□□□ 1.41
TRIM54-201ENST00000296098 PPP6CO00743 305 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 CASQ2O14958 399 aaPredicted RBP23.83■■□□□ 1.4
TRIM54-201ENST00000296098 OR1I1O60431 355 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 GREM1O60565 184 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 NIPSNAP2O75323 286 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 SNRPB2P08579 225 aaKnown RBP23.83■■□□□ 1.4
TRIM54-201ENST00000296098 CD9P21926 228 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 PEX2P28328 305 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 PSME3P61289 254 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 LCP2Q13094 533 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 TRIP10Q15642 601 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 ATXN7L2Q5T6C5 722 aaPredicted RBP23.83■■□□□ 1.4
TRIM54-201ENST00000296098 LPCAT4Q643R3 524 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 PDSS2Q86YH6 399 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 RNF148Q8N7C7 305 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 WFDC5Q8TCV5 224 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 TRPC4APQ8TEL6 797 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 VWCEQ96DN2 955 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 SLC25A23Q9BV35 468 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 GEMIN8Q9NWZ8 242 aaKnown RBP23.83■■□□□ 1.4
TRIM54-201ENST00000296098 SPG21Q9NZD8 308 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 GALPQ9UBC7 116 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 PSMD13Q9UNM6 376 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 ZNF711Q9Y462 761 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 PCDHGA7Q9Y5G6 932 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 CPQQ9Y646 472 aa23.83■■□□□ 1.4
TRIM54-201ENST00000296098 A6NHS1 94 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 CDC7O00311 574 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 GFRA2O00451 464 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 BTN3A1O00481 513 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 TRIM38O00635 465 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 FZD6O60353 706 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 LAG3P18627 525 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 XIAPP98170 497 aa23.82■■□□□ 1.4
TRIM54-201ENST00000296098 CLCQ05315 142 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms