RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CLDN11O75508 207 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 RNASEH2AO75792 299 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 PENKP01210 267 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 CR2P20023 1033 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 XIAPP98170 497 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 PDK3Q15120 406 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 IL23RQ5VWK5 629 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 ZFP1Q6P2D0 407 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 GALNT4Q8N4A0 578 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 C2orf15Q8WU43 125 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 NAT14Q8WUY8 206 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 VN1R3Q9BXE9 311 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 TUBB1Q9H4B7 451 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 BCAP29Q9UHQ4 241 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 TSR3Q9UJK0 312 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 C2orf81A6NN90 581 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 PQBP1O60828 265 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 NIPSNAP2O75323 286 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 HMGA1P17096 107 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 ALDH7A1P49419 539 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 AGTR2P50052 363 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 STX1BP61266 288 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 PLD1Q13393 1074 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 BFSP2Q13515 415 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TRIM25Q14258 630 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TLR1Q15399 786 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TAF1AQ15573 450 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 RARS2Q5T160 578 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 AFTPHQ6ULP2 937 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 FAM126BQ8IXS8 530 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 CRIPAKQ8N1N5 446 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 FBXO39Q8N4B4 442 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 ASB9Q96DX5 294 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 GBP5Q96PP8 586 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC25A23Q9BV35 468 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TFB2MQ9H5Q4 396 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 INTS10Q9NVR2 710 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 PCDHGB4Q9UN71 923 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TIMM22Q9Y584 194 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 PCDHGB5Q9Y5G0 923 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 LAMA3Q16787 3333 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SCN5AQ14524 2016 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 NR5A2O00482 541 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 ECI2O75521 394 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 GPX3P22352 226 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC8B1Q6J4K2 584 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 KIAA1841Q6NSI8 718 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 DEFB128Q7Z7B8 93 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SIDT2Q8NBJ9 832 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 RHEBL1Q8TAI7 183 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 STAG3L4Q8TBR4 150 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 KIAA1191Q96A73 305 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 TUBGCP3Q96CW5 907 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 CDK5RAP1Q96SZ6 601 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SEMA6AQ9H2E6 1030 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 SPAG4Q9NPE6 437 aa18.27■□□□□ 0.52
SHKBP1-201ENST00000291842 PRSS51A0A1B0GVH4 220 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 BTN3A1O00481 513 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 MC4RP32245 332 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 TUFMP49411 452 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 ARF5P84085 180 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 CLCQ05315 142 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 RAD51Q06609 339 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 NOGQ13253 232 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 VPS26BQ4G0F5 336 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 ZRANB3Q5FWF4 1079 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 RETREG3Q86VR2 466 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 BIRC8Q96P09 236 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 POPDC3Q9HBV1 291 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 SYTL2Q9HCH5 934 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 SARS2Q9NP81 518 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 CROTQ9UKG9 612 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 PHF24Q9UPV7 400 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 A0A0J9YYE9 177 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 ILVBLA1L0T0 632 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 TRIM24O15164 1050 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 KERAO60938 352 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 CSPG5O95196 566 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 C1RP00736 705 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 F11P03951 625 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 HOXB8P17481 243 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 PRDX3P30048 256 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 TRAF2Q12933 501 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 TAF12Q16514 161 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 ADGRF1Q5T601 910 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 CXorf57Q6NSI4 855 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 TSC22D3Q99576 134 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 MRPL9Q9BYD2 267 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 DERL2Q9GZP9 239 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 EPS15L1Q9UBC2 864 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 MTRRQ9UBK8 725 aa18.26■□□□□ 0.51
SHKBP1-201ENST00000291842 IQCF5A8MTL0 148 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 ANKRD66B4E2M5 251 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 TMCC1O94876 653 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 CD160O95971 181 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 BMP1P13497 986 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 LPOP22079 712 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 MZF1P28698 734 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 SLC7A2P52569 658 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 TWF1Q12792 350 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms