RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLC1A2P43004 574 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 CCL15Q16663 113 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 KLHL22Q53GT1 634 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ARSKQ6UWY0 536 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PSTKQ8IV42 348 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 SPATA7Q9P0W8 599 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF20P17024 532 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 DCST1Q5T197 706 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC30A8Q8IWU4 369 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 DCAKDQ8WVC6 231 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 NECAB3Q96P71 396 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 CHIAQ9BZP6 476 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 GIN1Q9NXP7 522 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 TIMM8BQ9Y5J9 83 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 KELP23276 732 aa13.9□□□□□ -0.19
CCDC88A-201ENST00000263630 DDX6P26196 483 aaKnown RBP eCLIP13.9□□□□□ -0.192e-8■■■■■ 56.6
CCDC88A-201ENST00000263630 FCGR1BQ92637 280 aa13.9□□□□□ -0.19
CCDC88A-201ENST00000263630 KCNF1Q9H3M0 494 aa13.9□□□□□ -0.19
CCDC88A-201ENST00000263630 ACSL1P33121 698 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SEPHS1P49903 392 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ST3GAL4Q11206 333 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SYCE2Q6PIF2 218 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 EXOC2Q96KP1 924 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 KIAA1683Q9H0B3 1180 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 XPNPEP3Q9NQH7 507 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 NUDT15Q9NV35 164 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ELOVL2Q9NXB9 296 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CLUHO75153 1309 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 KCTD8Q6ZWB6 473 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 GIMAP5Q96F15 307 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 TRIM36Q9NQ86 728 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF180Q9UJW8 692 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 BIVM-ERCC5R4GMW8 1640 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 WDR62O43379 1518 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CLDN4O14493 209 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ADAMDEC1O15204 470 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 MIPEPQ99797 713 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 E7ENX8 843 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CBX6O95503 412 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF14P17017 642 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CYP11B2P19099 503 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CBX2Q14781 532 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ZDHHC20Q5W0Z9 365 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 TRIM43Q96BQ3 446 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 FAM105AQ9NUU6 356 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 NARFQ9UHQ1 456 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 A0A087X0B3 334 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ENTPD5O75356 428 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SPARCP09486 303 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 TPH1P17752 444 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 GRM3Q14832 879 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 PHYKPLQ8IUZ5 450 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC41A1Q8IVJ1 513 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 A0A0J9YVX5 310 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ERAL1O75616 437 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC16A8O95907 504 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 RAB10P61026 200 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF792Q3KQV3 632 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF311Q5JNZ3 666 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 NEPROQ6NW34 567 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 FAM83AQ86UY5 434 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CLP1Q92989 425 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 TRPV2Q9Y5S1 764 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 PZPP20742 1482 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 GSG1L2A8MUP6 293 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 C9IYK1 514 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 SCGB1D2O95969 90 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 YBX3P16989 372 aaKnown RBP eCLIP13.89□□□□□ -0.191e-6■■□□□ 12
CCDC88A-201ENST00000263630 GJA9P57773 515 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ANKRD13AQ8IZ07 590 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 ANKRA2Q9H9E1 313 aa13.89□□□□□ -0.19
CCDC88A-201ENST00000263630 CSN2P05814 226 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 RRP1BQ14684 758 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TTI2Q6NXR4 508 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 C7orf61Q8IZ16 206 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 SPATA22Q8NHS9 363 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TCOF1Q13428 1488 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ISM1B1AKI9 464 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 PSMD9O00233 223 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 NDUFB10O96000 172 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ATP6V0D1P61421 351 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ELF3P78545 371 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CBLBQ13191 982 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CPB2Q96IY4 423 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC22A4Q9H015 551 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF69Q9UC07 566 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CITO14578 2027 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 GNA12Q03113 381 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 SPIN3Q5JUX0 258 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 LYARQ9NX58 379 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.88□□□□□ -0.196e-11■■■■■ 36.3
CCDC88A-201ENST00000263630 PER1O15534 1290 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 RENP00797 406 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 GRK6P43250 576 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 C9orf64Q5T6V5 341 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 GJB7Q6PEY0 223 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 SCGB1C1Q8TD33 95 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 MICAL2O94851 1124 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 UNC5CO95185 931 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 FAM228BP0C875 321 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms