RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SIRPB2Q5JXA9 342 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 ESRP1Q6NXG1 681 aaKnown RBP16.72■□□□□ 0.27
SDCBP-201ENST00000260130 SLC25A41Q8N5S1 370 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 APOOQ9BUR5 198 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 ZFYVE1Q9HBF4 777 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 YKT6O15498 198 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 PCDHGA12O60330 932 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 METTL18O95568 372 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 AGTP01019 485 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 HLA-DPA1P20036 260 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 ECHS1P30084 290 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 SHBQ15464 509 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 TPRG1LQ5T0D9 272 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 PNCKQ6P2M8 343 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 DBX2Q6ZNG2 339 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 RFLNAQ6ZTI6 216 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 LYSMD3Q7Z3D4 306 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 AP1M1Q9BXS5 423 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 SHOC2Q9UQ13 582 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 OR1A2Q9Y585 309 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 IFNB1P01574 187 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 TRIM23P36406 574 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 CHRNA4P43681 627 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 IL9RQ01113 521 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 RANBP10Q6VN20 620 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 PARGQ86W56 976 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 KLHDC8BQ8IXV7 354 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 NRSN1Q8IZ57 195 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 NAP1L3Q99457 506 aaPredicted RBP16.71■□□□□ 0.27
SDCBP-201ENST00000260130 FICDQ9BVA6 458 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 ABCG8Q9H221 673 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 CD84Q9UIB8 345 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 DCDC2BA2VCK2 349 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 K7ESM1 405 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 FGF1P05230 155 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 ADRA1AP35348 466 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 GUCY1A3Q02108 690 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 DPTQ07507 201 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 NLRP8Q86W28 1048 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 PELI3Q8N2H9 469 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 PRELID2Q8N945 189 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 AP2M1Q96CW1 435 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 EID2BQ96D98 161 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 GPR63Q9BZJ6 419 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 DDX47Q9H0S4 455 aaKnown RBP16.71■□□□□ 0.27
SDCBP-201ENST00000260130 FAM114A2Q9NRY5 505 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 PKD2L2Q9NZM6 624 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 ZNF711Q9Y462 761 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 SPO11Q9Y5K1 396 aa16.71■□□□□ 0.27
SDCBP-201ENST00000260130 LRRK1Q38SD2 2015 aa16.71■□□□□ 0.26
SDCBP-201ENST00000260130 SPTBN4Q9H254 2564 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 RGSL1A5PLK6 1076 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 VGLL3A8MV65 326 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 TSHRP16473 764 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 HTR1BP28222 390 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 SPINT3P49223 89 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 BNIP3Q12983 259 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 ZNF542PQ5EBM4 170 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 MACC1Q6ZN28 852 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 ZNF765Q7L2R6 523 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 TMC3Q7Z5M5 1100 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 CCDC89Q8N998 374 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 SAP25Q8TEE9 199 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 SCAMP4Q969E2 229 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 FUBP1Q96AE4 644 aaKnown RBP16.7■□□□□ 0.26
SDCBP-201ENST00000260130 TRABDQ9H4I3 376 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 DNAJC28Q9NX36 388 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 SH3BP5O60239 455 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 HOXC4P09017 264 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-201ENST00000260130 EPHA8P29322 1005 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-201ENST00000260130 NFATC4Q14934 902 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 PIP4P1Q86T03 277 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 WDR26Q9H7D7 661 aa16.7■□□□□ 0.26
SDCBP-201ENST00000260130 UTP11Q9Y3A2 253 aaKnown RBP16.7■□□□□ 0.26
SDCBP-201ENST00000260130 CACNB4O00305 520 aaPredicted RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 FLRT2O43155 660 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 CSF2P04141 144 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 ETS1P14921 441 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 TEAD1P28347 426 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 KCNJ1P48048 391 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 EIF2B5Q13144 721 aaKnown RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 FAXCQ5TGI0 409 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 AGBL2Q5U5Z8 902 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 KCTD11Q693B1 232 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 RAET1GQ6H3X3 334 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 GATAD2AQ86YP4 633 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 NAXDQ8IW45 347 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 TAB3Q8N5C8 712 aaPredicted RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 OTUD6BQ8N6M0 293 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 ZNF473Q8WTR7 871 aaKnown RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 SETD7Q8WTS6 366 aaKnown RBP16.69■□□□□ 0.26
SDCBP-201ENST00000260130 SEC14L1Q92503 715 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 APOL2Q9BQE5 337 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 FAM83DQ9H4H8 585 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 HACD3Q9P035 362 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 NFS1Q9Y697 457 aa16.69■□□□□ 0.26
SDCBP-201ENST00000260130 AURKAO14965 403 aa16.68■□□□□ 0.26
SDCBP-201ENST00000260130 PSMD3O43242 534 aa16.68■□□□□ 0.26
SDCBP-201ENST00000260130 NME1P15531 152 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms