RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CDY2AQ9Y6F7 541 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 G3V2T6 193 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ENPP3O14638 875 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC31A2O15432 143 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCCAP05165 728 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 HNRNPLP14866 589 aaKnown RBP eCLIP3.57□□□□□ -1.848e-7■■■□□ 16.4
SCN1A-221ENST00000641996 ACADLP28330 430 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DNM2P50570 870 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RTP1P59025 263 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 UBE2G2P60604 165 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CYP27A1Q02318 531 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PIK3R6Q5UE93 754 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 IRAK1BP1Q5VVH5 260 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LIPJQ5W064 366 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 IL27RAQ6UWB1 636 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 IDO2Q6ZQW0 420 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GPRIN1Q7Z2K8 1008 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC4A9Q96Q91 983 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZDHHC5Q9C0B5 715 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RC3H2Q9HBD1 1191 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SMURF1Q9HCE7 757 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PPP4R1LQ9P1A2 415 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KLHL14Q9P2G3 628 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PPARGC1AQ9UBK2 798 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FBXW2Q9UKT8 454 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SHOC2Q9UQ13 582 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PPP1R3CQ9UQK1 317 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 STARD13Q9Y3M8 1113 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NPHP3-ACAD11A0A0J9YXS1 232 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DCDC2CA8MYV0 355 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 M0R296 226 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 WDPCPO95876 746 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GTF2E2P29084 291 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 HSD17B4P51659 736 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 P2RX3P56373 397 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TARBP2Q15633 366 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PPP1R3AQ16821 1122 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KLHL17Q6TDP4 642 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FAM185AQ8N0U4 392 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NLGN4XQ8N0W4 816 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AGGF1Q8N302 714 aaeCLIP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 STX19Q8N4C7 294 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NFATC2IPQ8NCF5 419 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC24A4Q8NFF2 622 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 BLOC1S5Q8TDH9 187 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NPRL2Q8WTW4 380 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 BTBD1Q9H0C5 482 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GOLPH3Q9H4A6 298 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM260Q9NX78 707 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KPTNQ9Y664 436 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCNE2Q9Y6J6 123 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CLCA3PQ9Y6N3 262 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ARFGEF3Q5TH69 2177 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GREB1LQ9C091 1923 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 A0A096LPI6 279 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ERI2A8K979 691 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 C1orf196B1AJZ1 125 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCNK1O00180 336 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GRIN3BO60391 1043 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KHDRBS3O75525 346 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ADAP1O75689 374 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 EYA4O95677 639 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FASTKD3Q14CZ7 662 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 HLFQ16534 295 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGAP40Q5TG30 622 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LRRTM4Q86VH4 590 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PAPD5Q8NDF8 572 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RIT1Q92963 219 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TESCQ96BS2 214 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 XPO6Q96QU8 1125 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TBX5Q99593 518 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 XPNPEP1Q9NQW7 623 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF175Q9Y473 711 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 WIF1Q9Y5W5 379 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DCDC2BA2VCK2 349 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 H0Y858 1186 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NEMP1O14524 444 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CAP2P40123 477 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TUBB4BP68371 445 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLFN5Q08AF3 891 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GALNT2Q10471 571 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DENND1BQ6P3S1 775 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCTD8Q6ZWB6 473 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA19Q7Z5L4 167 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 EIF1ADQ8N9N8 165 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SUN3Q8TAQ9 357 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FUBP3Q96I24 572 aaKnown RBP eCLIP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 C17orf62Q9BQA9 187 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 POLE4Q9NR33 117 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FZD10Q9ULW2 581 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NPFFR2Q9Y5X5 522 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCNX1Q96RV3 2341 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MYBBP1AQ9BQG0 1328 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TRIM49BA6NDI0 452 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC9B1P1A6NJY1 282 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TRIM49D1C9J1S8 452 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PIP5K1BO14986 540 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 STX7O15400 261 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TCF21O43680 179 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TLR5O60602 858 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms