RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 POLR2LP62875 67 aaKnown RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 CACNG1Q06432 222 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 DMTNQ08495 405 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 ILF2Q12905 390 aaKnown RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 DLG1Q12959 904 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 PCLAFQ15004 111 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 FAM151BQ6UXP7 276 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 MICALL1Q8N3F8 863 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 KDM1BQ8NB78 822 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 SMRP1Q8NCR6 262 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 TSNARE1Q96NA8 513 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 NMRAL1Q9HBL8 299 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 B4GALT6Q9UBX8 382 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 SLC30A1Q9Y6M5 507 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 UBA6A0AVT1 1052 aaPredicted RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 TSPAN11A1L157 253 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 TBC1D3BA6NDS4 549 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 ARNTLO00327 626 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 GAPDHSO14556 408 aaPredicted RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 POU3F3P20264 500 aaPredicted RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 KCNA4P22459 653 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 FDXRP22570 491 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 ALDH3A1P30838 453 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 TTPAP49638 278 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 TIAL1Q01085 375 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-252ENST00000636907 ZNF234Q14588 700 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 CHI3L2Q15782 390 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 HNRNPA1L2Q32P51 320 aaKnown RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 LCA5Q86VQ0 697 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 TRIM42Q8IWZ5 723 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 SPATA6LQ8N4H0 392 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 NXNL1Q96CM4 212 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 LRIG1Q96JA1 1093 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 NECTIN4Q96NY8 510 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 GPR78Q96P69 363 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 AARSD1Q9BTE6 412 aaKnown RBP16.81■□□□□ 0.28
CLN3-252ENST00000636907 OSBPL1AQ9BXW6 950 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 COPG2Q9UBF2 871 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 NUMBLQ9Y6R0 609 aa16.81■□□□□ 0.28
CLN3-252ENST00000636907 ZNF106Q9H2Y7 1883 aaKnown RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 ANTXRLA6NF34 631 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 KLF11O14901 512 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 SNX3O60493 162 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 SRP72O76094 671 aaKnown RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 KLHL2O95198 593 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 KAT7O95251 611 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 WISP3O95389 354 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 PRAMEF1O95521 474 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 CHRM1P11229 460 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 FMO4P31512 558 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 EIF2DP41214 584 aaKnown RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 GLRBP48167 497 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 PTSQ03393 145 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 DBN1Q16643 649 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 ITPRIPL2Q3MIP1 535 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 AARS2Q5JTZ9 985 aaKnown RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 RNF187Q5TA31 235 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 CES4AQ5XG92 561 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 MTSS1LQ765P7 747 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 TAS2R42Q7RTR8 314 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 OTOAQ7RTW8 1153 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 PIM3Q86V86 326 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 CACNA2D3Q8IZS8 1091 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 CBARPQ8N350 705 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 SUSD6Q92537 303 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 GPAMQ9HCL2 828 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 IL26Q9NPH9 171 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 EPS15L1Q9UBC2 864 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 HCN2Q9UL51 889 aa16.8■□□□□ 0.28
CLN3-252ENST00000636907 MTF2Q9Y483 593 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 USP15Q9Y4E8 981 aaPredicted RBP16.8■□□□□ 0.28
CLN3-252ENST00000636907 TMEM265A0A087WTH1 108 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 EDDM13A0A1B0GTR0 161 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.79■□□□□ 0.28
CLN3-252ENST00000636907 OR1I1O60431 355 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 C1SP09871 688 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 TIMP2P16035 220 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 CA5AP35218 305 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 SPAM1P38567 509 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 POM121L1PQ3SYA9 428 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 ZNF805Q5CZA5 627 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 C9orf64Q5T6V5 341 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 LRRC8EQ6NSJ5 796 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 TMEM207Q6UWW9 146 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 TBC1D1Q86TI0 1168 aaPredicted RBP16.79■□□□□ 0.28
CLN3-252ENST00000636907 C10orf107Q8IVU9 208 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 STK40Q8N2I9 435 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 TMEM151AQ8N4L1 468 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 CCDC197Q8NCU1 140 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 RAB3IL1Q8TBN0 382 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 HEXDCQ8WVB3 486 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 UCMAQ8WVF2 138 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 TSSK1BQ9BXA7 367 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 UNKQ9C0B0 810 aaKnown RBP16.79■□□□□ 0.28
CLN3-252ENST00000636907 IGSF5Q9NSI5 407 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 DKK3Q9UBP4 350 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 APPL1Q9UKG1 709 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 SARDHQ9UL12 918 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 VPS9D1Q9Y2B5 631 aa16.79■□□□□ 0.28
CLN3-252ENST00000636907 STARD13Q9Y3M8 1113 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms