RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 AFAP1L2Q8N4X5 818 aa22■■□□□ 1.11
PNKP-220ENST00000627232 ZNF557Q8N988 423 aaPredicted RBP22■■□□□ 1.11
PNKP-220ENST00000627232 ISG20Q96AZ6 181 aaKnown RBP22■■□□□ 1.11
PNKP-220ENST00000627232 GPR63Q9BZJ6 419 aa22■■□□□ 1.11
PNKP-220ENST00000627232 DERL2Q9GZP9 239 aa22■■□□□ 1.11
PNKP-220ENST00000627232 ACSS2Q9NR19 701 aa22■■□□□ 1.11
PNKP-220ENST00000627232 INTS6Q9UL03 887 aaKnown RBP22■■□□□ 1.11
PNKP-220ENST00000627232 SCN8AQ9UQD0 1980 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 CCDC189A1A4V9 331 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 SLC22A2O15244 555 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 MOSPD3O75425 235 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 HNRNPA1P09651 372 aaKnown RBP eCLIP21.99■■□□□ 1.11
PNKP-220ENST00000627232 PKMP14618 531 aaKnown RBP21.99■■□□□ 1.11
PNKP-220ENST00000627232 NCF2P19878 526 aaPredicted RBP21.99■■□□□ 1.11
PNKP-220ENST00000627232 SP100P23497 879 aaPredicted RBP21.99■■□□□ 1.11
PNKP-220ENST00000627232 CPA2P48052 419 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 XIAPP98170 497 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 CACNG1Q06432 222 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 PSAPL1Q6NUJ1 521 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 CAMK1DQ8IU85 385 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 STK40Q8N2I9 435 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 AGR3Q8TD06 166 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 PTERQ96BW5 349 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 CMTM5Q96DZ9 223 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 OR52B2Q96RD2 323 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 ATP13A3Q9H7F0 1226 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 MAN1C1Q9NR34 630 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 ZMYM5Q9UJ78 669 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 CDYLQ9Y232 598 aa21.99■■□□□ 1.11
PNKP-220ENST00000627232 OAS3Q9Y6K5 1087 aaKnown RBP21.99■■□□□ 1.11
PNKP-220ENST00000627232 C5orf67F2Z3F1 127 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 TPBGLP0DKB5 382 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 ADSLP30566 484 aaPredicted RBP21.98■■□□□ 1.11
PNKP-220ENST00000627232 LBX1P52954 281 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 ATP6V0D1P61421 351 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 RAD51Q06609 339 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 TEAD2Q15562 447 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 PTPRNQ16849 979 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 ZRANB3Q5FWF4 1079 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 FRMD7Q6ZUT3 714 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 PIANPQ8IYJ0 282 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 NKAPQ8N5F7 415 aaKnown RBP21.98■■□□□ 1.11
PNKP-220ENST00000627232 RBM15BQ8NDT2 890 aaKnown RBP21.98■■□□□ 1.11
PNKP-220ENST00000627232 OR2AP1Q8NGE2 309 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 AGAP11Q8TF27 550 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.98■■□□□ 1.11
PNKP-220ENST00000627232 TCEAL4Q96EI5 215 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 BIRC8Q96P09 236 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 SMG9Q9H0W8 520 aaKnown RBP21.98■■□□□ 1.11
PNKP-220ENST00000627232 CYP4F12Q9HCS2 524 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 BPIFA1Q9NP55 256 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 HS3ST2Q9Y278 367 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 MED16Q9Y2X0 877 aa21.98■■□□□ 1.11
PNKP-220ENST00000627232 A0A0J9YYE9 177 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 VPS26AO75436 327 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 ZNF821O75541 412 aaPredicted RBP21.97■■□□□ 1.11
PNKP-220ENST00000627232 TRBC1P01850 177 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 PGM1P36871 562 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 PTGER3P43115 390 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 KCNC1P48547 511 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 CDKN1CP49918 316 aaPredicted RBP21.97■■□□□ 1.11
PNKP-220ENST00000627232 RAP1GDS1P52306 607 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 SNRPD1P62314 119 aaKnown RBP21.97■■□□□ 1.11
PNKP-220ENST00000627232 SATB1Q01826 763 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 NAA25Q14CX7 972 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 LSM12Q3MHD2 195 aaKnown RBP21.97■■□□□ 1.11
PNKP-220ENST00000627232 SETMARQ53H47 684 aaPredicted RBP21.97■■□□□ 1.11
PNKP-220ENST00000627232 CERS6Q6ZMG9 384 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 LYSMD3Q7Z3D4 306 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 KIAA1191Q96A73 305 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 ASB2Q96Q27 587 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 TUBGCP5Q96RT8 1024 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 PLA2G4CQ9UP65 541 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 CCL26Q9Y258 94 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 SLC30A1Q9Y6M5 507 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 DOCK6Q96HP0 2047 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 NOTCH4Q99466 2003 aa21.97■■□□□ 1.11
PNKP-220ENST00000627232 LINC01553A4QN01 128 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 E9PBE3 544 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 GRM6O15303 877 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 KLHL41O60662 606 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 XYLBO75191 536 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 RFPL2O75678 378 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 RHOP08100 348 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SRCP12931 536 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 TCF3P15923 654 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 CTPS1P17812 591 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SERPINA4P29622 427 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 COPAP53621 1224 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 HERVK_113P63132 956 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SULT2A1Q06520 285 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 KLF10Q13118 480 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SH2D4BQ5SQS7 431 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 ZNF678Q5SXM1 525 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 PAQR3Q6TCH7 311 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 RAB44Q7Z6P3 723 aaPredicted RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 CPSF7Q8N684 471 aaKnown RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 DNAJC5GQ8N7S2 189 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 MICAL1Q8TDZ2 1067 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 MAELQ96JY0 434 aaKnown RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms