RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ECHDC2Q86YB7 292 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 LCN9Q8WX39 176 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 KREMEN1Q96MU8 473 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 KLHL32Q96NJ5 620 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 HNRNPABQ99729 332 aaKnown RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 MRPS26Q9BYN8 205 aaKnown RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 DHX33Q9H6R0 707 aaKnown RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 KCNU1A8MYU2 1149 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 NDST3O95803 873 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 HNRNPLP14866 589 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 NT5EP21589 574 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 MAPKAPK2P49137 400 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 UGT2B15P54855 530 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 SEMA5AQ13591 1074 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 PDZK1Q5T2W1 519 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 ZFP1Q6P2D0 407 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 NEK5Q6P3R8 708 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 RPTNQ6XPR3 784 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 AUTS2Q8WXX7 1259 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 CENPIQ92674 756 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 B3GALT6Q96L58 329 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 VPS35Q96QK1 796 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 C6orf62Q9GZU0 229 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 DNAJC11Q9NVH1 559 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 A0A1W2PRU2 124 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 C5orf60A6NFR6 353 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 RFXANKO14593 260 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 NR1D2Q14995 579 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 HECTD2Q5U5R9 776 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 MSANTD2Q6P1R3 559 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 CHST15Q7LFX5 561 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 FAM98AQ8NCA5 519 aaKnown RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 RPL10LQ96L21 214 aaKnown RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 ACE2Q9BYF1 805 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-219ENST00000620786 ALKBH4Q9NXW9 302 aa11.36□□□□□ -0.59
CLIP1-219ENST00000620786 EFCAB10A6NFE3 127 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PTGES3LE9PB15 166 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PRMT5O14744 637 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 BMP7P18075 431 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 TRIM25Q14258 630 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 MINDY4Q4G0A6 757 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 RSBN1Q5VWQ0 802 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 ART4Q93070 314 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 OR52E6Q96RD3 313 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 MAGEH1Q9H213 219 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 KCNN2Q9H2S1 579 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 RCOR3Q9P2K3 495 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 ZNF490Q9ULM2 529 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 SLC45A1Q9Y2W3 748 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 COL14A1Q05707 1796 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 NFKBIEO00221 500 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 NRP1O14786 923 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 INSIG1O15503 277 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PRAMEF1O95521 474 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 YBEYP58557 167 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 TNS4Q8IZW8 715 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 DDHD1Q8NEL9 900 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 AENQ8WTP8 325 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PHF10Q8WUB8 498 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 BAP1Q92560 729 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 LPIN3Q9BQK8 851 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 GPR88Q9GZN0 384 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 GBA3Q9H227 469 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 CD248Q9HCU0 757 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 EXD2Q9NVH0 621 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 MRPL39Q9NYK5 338 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 FAM237BA0A1B0GVD1 139 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 SHBGP04278 402 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 CCNCP24863 283 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 AUHQ13825 339 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 TPGS2Q68CL5 300 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PMF1Q6P1K2 205 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 AADATQ8N5Z0 425 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PIWIL2Q8TC59 973 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 ACMSDQ8TDX5 336 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 SH3RF2Q8TEC5 729 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 RORBQ92753 470 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 EMID1Q96A84 441 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PCDHGB3Q9Y5G1 929 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 SNX10Q9Y5X0 201 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 C22orf31O95567 290 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 CLPTM1O96005 669 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 PKMP14618 531 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 IDH2P48735 452 aaKnown RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 CCR3P51677 355 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 RAPSNQ13702 412 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 UBXN11Q5T124 520 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 ST13P5Q8NFI4 369 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 STYXQ8WUJ0 223 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 IPCEF1Q8WWN9 437 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-219ENST00000620786 SHDQ96IW2 340 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 CLN6Q9NWW5 311 aa11.35□□□□□ -0.59
CLIP1-219ENST00000620786 WWP2O00308 870 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PBX3P40426 434 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 SLC20A2Q08357 652 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PRKG2Q13237 762 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 NEDD8Q15843 81 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 C2orf27AQ580R0 203 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CTU1Q7Z7A3 348 aaKnown RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 EXOC3L1Q86VI1 746 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms