RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF557Q8N988 423 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 MZB1Q8WU39 189 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 HERVK_113Q902F9 699 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 ZSWIM3Q96MP5 696 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 TDRD1Q9BXT4 1180 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 ARHGAP26Q9UNA1 814 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 IGLV3-10A0A075B6K4 115 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 AIM2O14862 343 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 PKMP14618 531 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 NQO1P15559 274 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 HLA-FP30511 346 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 HNRNPH1P31943 449 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 UBAP2LQ14157 1087 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 YTHDF3Q7Z739 585 aaKnown RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 SERPINA9Q86WD7 417 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 LINGO1Q96FE5 620 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 HEPHQ9BQS7 1158 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 APPL1Q9UKG1 709 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 A0A087X1B8 175 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 MSH3P20585 1137 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 ATXN3P54252 364 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 TTLL9Q3SXZ7 439 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 SETMARQ53H47 684 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 ADGRD2Q7Z7M1 963 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 PRR11Q96HE9 360 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-213ENST00000620219 CD248Q9HCU0 757 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 MID1IP1Q9NPA3 183 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 CDYLQ9Y232 598 aa15.69■□□□□ 0.1
CPSF1-213ENST00000620219 PRMT5O14744 637 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 ZMPSTE24O75844 475 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 ELFN1P0C7U0 828 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 MPSTP25325 297 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 SOX11P35716 441 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CDKN1CP49918 316 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 MYLK3Q32MK0 819 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 STEAP4Q687X5 459 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 SIDT2Q8NBJ9 832 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 ZNF638Q14966 1978 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 THSD7BQ9C0I4 1608 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 HEPACAM2A8MVW5 462 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 OR1I1O60431 355 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 RNASEH1O60930 286 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 HNRNPA1P09651 372 aaKnown RBP eCLIP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 MAP4P27816 1152 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CLCN4P51793 760 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 DHCR24Q15392 516 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 SCIMPQ6UWF3 145 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CILP2Q8IUL8 1156 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 LEMD2Q8NC56 503 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 GATA5Q9BWX5 397 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 PKD2L2Q9NZM6 624 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 HSFX1Q9UBD0 423 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 RALGAPA2Q2PPJ7 1873 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 TTC34A8MYJ7 566 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 ZBTB14O43829 449 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 FSBPO95073 299 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 KRT16P08779 473 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 EPHA3P29320 983 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 HMOX2P30519 316 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 SLC20A2Q08357 652 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CXorf57Q6NSI4 855 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 LAYNQ6UX15 382 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 METTL3Q86U44 580 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 FAM124AQ86V42 546 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CPNE9Q8IYJ1 553 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CHST14Q8NCH0 376 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 TRPC4APQ8TEL6 797 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 C10orf82Q8WW14 230 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 COPS8Q99627 209 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 SSU72Q9NP77 194 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 OR2AG2A6NM03 316 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 DCXO43602 365 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 IGLV3-27P01718 113 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CYP2A6P11509 494 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 DDX6P26196 483 aaKnown RBP eCLIP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 RNF43Q68DV7 783 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 PAQR3Q6TCH7 311 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 KIAA0408Q6ZU52 694 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CEP97Q8IW35 865 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 FLCNQ8NFG4 579 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CATSPER2Q96P56 530 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 MRPL57Q9BQC6 102 aaKnown RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 WDR55Q9H6Y2 383 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-213ENST00000620219 ATG2BQ96BY7 2078 aa15.68■□□□□ 0.1
CPSF1-213ENST00000620219 CCNT2O60583 730 aaKnown RBP15.67■□□□□ 0.1
CPSF1-213ENST00000620219 SLC25A14O95258 325 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-213ENST00000620219 CHRNGP07510 517 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 ARSAP15289 507 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 ATP5F1P24539 256 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-213ENST00000620219 UBE3AQ05086 875 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 BIRC2Q13490 618 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 GTF2H3Q13889 308 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 RAB30Q15771 203 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 IMPG1Q17R60 797 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 TRAPPC5Q8IUR0 188 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 FGF13Q92913 245 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 TUBGCP3Q96CW5 907 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 GORASP1Q9BQQ3 440 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 TBC1D30Q9Y2I9 924 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 PSMD8P48556 350 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms