RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TMEM102Q8N9M5 508 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 PLEKHA8Q96JA3 519 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 HIPK3Q9H422 1215 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 RIBC2Q9H4K1 309 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 CATSPERZQ9NTU4 200 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 EXD2Q9NVH0 621 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 SLC12A8A0AV02 714 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 MATN3O15232 486 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 CD3EAPO15446 510 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 NOBOXO60393 691 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 OR4Q2P0C623 313 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 CYP4B1P13584 511 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 CCNCP24863 283 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 PRKG2Q13237 762 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 RFTN1Q14699 578 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 CRTC3Q6UUV7 619 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 SMOQ99835 787 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 AGO3Q9H9G7 860 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 BPIFA1Q9NP55 256 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 RNF181Q9P0P0 153 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 SLC30A1Q9Y6M5 507 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 PPP6CO00743 305 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 CST1P01037 141 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 IMPDH1P20839 514 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 TBX4P57082 545 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 SFSWAPQ12872 951 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 ANKDD1AQ495B1 522 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 PKDCCQ504Y2 493 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 KIAA0930Q6ICG6 404 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 BNIPLQ7Z465 357 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 RORBQ92753 470 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 ROPN1LQ96C74 230 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 SEPT5Q99719 369 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 DDX28Q9NUL7 540 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 CCL15-CCL14A0A0B4J2E2 113 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 LINC00854A0A1B0GVQ3 168 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 BBIP1A8MTZ0 92 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CXCL11O14625 94 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 SERPINF2P08697 491 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 JAK1P23458 1154 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ELK4P28324 431 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 AKT1P31749 480 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 GGT5P36269 586 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 SCNN1AP37088 669 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CLCQ05315 142 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 MFSD10Q14728 455 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 RAB39AQ14964 217 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 TSNQ15631 228 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 CCL15Q16663 113 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 GCNT7Q6ZNI0 430 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 EFL1Q7Z2Z2 1120 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 CHERPQ8IWX8 916 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 TRPV3Q8NET8 790 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 LPCAT1Q8NF37 534 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 NTAN1Q96AB6 310 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 LRCH3Q96II8 777 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 FCRL5Q96RD9 977 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 SCN3BQ9NY72 215 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 C17orf102A2RUQ5 167 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ACOT8O14734 319 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 PIGFQ07326 219 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 PAGE2BQ5JRK9 111 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 INTS6LQ5JSJ4 861 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 CIR1Q86X95 450 aaPredicted RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 SLC15A3Q8IY34 581 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 OR7A2PQ8NGA2 310 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ANKRD49Q8WVL7 239 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CASP10Q92851 521 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ABHD8Q96I13 439 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ABCG8Q9H221 673 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 TMEM247A6NEH6 219 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 NME4O00746 187 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 B4GAT1O43505 415 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 IL7RP16871 459 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 MTHFRP42898 656 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 AIF1P55008 147 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 TUBA4AP68366 448 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 PMS2P3Q13401 168 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 GPSM1Q86YR5 675 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ZC3H7AQ8IWR0 971 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 ZNF513Q8N8E2 541 aaPredicted RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 OR56A4Q8NGH8 313 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 MTFMTQ96DP5 389 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 ZNF597Q96LX8 424 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 NFKBIZQ9BYH8 718 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 HMG20AQ9NP66 347 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CRTAC1Q9NQ79 661 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 TRIM17Q9Y577 477 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 NPEPPSL1A6NEC2 478 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 AQP12BA6NM10 295 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 AGRPO00253 132 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 SCAMP3O14828 347 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 FGF10O15520 208 aaPredicted RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 POLR2JP52435 117 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 SLC10A7Q0GE19 358 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 GNASQ5JWF2 1037 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CCNYL2Q5T2Q4 361 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 TTC23Q5W5X9 447 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 PPP4R4Q6NUP7 873 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 KIAA0408Q6ZU52 694 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms