RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RSPO4Q2I0M5 234 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 HENMT1Q5T8I9 393 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 RAET1GQ6H3X3 334 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 MACC1Q6ZN28 852 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 LINC00523Q86TU6 105 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 PARGQ86W56 976 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 GPR26Q8NDV2 337 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 AGAP2Q99490 1192 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 LGR4Q9BXB1 951 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 TEX101Q9BY14 249 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 DDX47Q9H0S4 455 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 CDH19Q9H159 772 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 FAM83DQ9H4H8 585 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 WDR26Q9H7D7 661 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 NFKBIL1Q9UBC1 381 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 CDV3Q9UKY7 258 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 SCN8AQ9UQD0 1980 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 APRTP07741 180 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 HOXC4P09017 264 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 BPIP17213 487 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 HTR1BP28222 390 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 GPR1P46091 355 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 LMAN1P49257 510 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 KIAA1024LP59773 190 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 DCDC1P59894 354 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 BASP1P80723 227 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 EIF2B5Q13144 721 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 SLC14A1Q13336 389 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 ZNF542PQ5EBM4 170 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 HEATR4Q86WZ0 1026 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 BRSK1Q8TDC3 778 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 GRK7Q8WTQ7 553 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 BPIFA1Q9NP55 256 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 RAD18Q9NS91 495 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 IL17CQ9P0M4 197 aa16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 PNMA8BQ9ULN7 279 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-202ENST00000611852 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 CACNB4O00305 520 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 TM4SF5O14894 197 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 BUD23O43709 281 aaKnown RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PCDHGA12O60330 932 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 GAS8O95995 478 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 CSF2P04141 144 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PYGLP06737 847 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 MYCLP1P12525 358 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 CD59P13987 128 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 TPH1P17752 444 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 GRIA1P42261 906 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 VPS41P49754 854 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 CDK3Q00526 305 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 IL9RQ01113 521 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 GPS1Q13098 491 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 TAF1AQ15573 450 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 ADAMTSL4Q6UY14 1074 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 OR52K1Q8NGK4 314 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 WDR92Q96MX6 357 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 CAAP1Q9H8G2 361 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 EIF2B3Q9NR50 452 aaKnown RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PHPT1Q9NRX4 125 aaPredicted RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PIH1D1Q9NWS0 290 aaKnown RBP16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 DNAJC28Q9NX36 388 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PCYOX1Q9UHG3 505 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 KLF15Q9UIH9 416 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 PCDHGB2Q9Y5G2 931 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 ARL5AQ9Y689 179 aa16.47■□□□□ 0.23
CCDC28A-202ENST00000611852 TMEM202A6NGA9 273 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 FADS2P1A8MWK0 482 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 YKT6O15498 198 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 ECEL1O95672 775 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 NME1P15531 152 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 SDHBP21912 280 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 LPOP22079 712 aaPredicted RBP16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 EPHA8P29322 1005 aaPredicted RBP16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 CDH17Q12864 832 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 BNIP3Q12983 259 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 ALS2CLQ60I27 953 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 ENPP7Q6UWV6 458 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 DBX2Q6ZNG2 339 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 SAP25Q8TEE9 199 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 SLCO2A1Q92959 643 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 PLEKHG4BQ96PX9 1271 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 PKP3Q9Y446 797 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 KCTD3Q9Y597 815 aa16.46■□□□□ 0.23
CCDC28A-202ENST00000611852 TDRD6O60522 2096 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 C2orf81A6NN90 581 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 CCDC188H7C350 402 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 LDB2O43679 373 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PPFIA2O75334 1257 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 CRTAMO95727 393 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KELP23276 732 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PTPRCAPQ14761 206 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 ALG11Q2TAA5 492 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 ZDHHC20Q5W0Z9 365 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KCTD16Q68DU8 428 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PPP1R21Q6ZMI0 780 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 GATAD2AQ86YP4 633 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KLHL7Q8IXQ5 586 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 DNAAF3Q8N9W5 541 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 OR56A4Q8NGH8 313 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms