RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 PLEKHM1Q9Y4G2 1056 aa13.12□□□□□ -0.31
RPS28-204ENST00000602140 PCDHB11Q9Y5F2 797 aa13.12□□□□□ -0.31
RPS28-204ENST00000602140 COL6A6A6NMZ7 2263 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 FLNBO75369 2602 aaKnown RBP13.11□□□□□ -0.31
RPS28-204ENST00000602140 IGHV5-10-1A0A0J9YXX1 117 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 PYCARD-AS1I3L0S3 204 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 PPM1DO15297 605 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 ZW10O43264 779 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 SOD1P00441 154 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 IVLP07476 585 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 CCL4P13236 92 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 IL4RP24394 825 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 CD1CP29017 333 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 ACTR1BP42025 376 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 GPR3P46089 330 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 ACTR1AP61163 376 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 PEX6Q13608 980 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 LINC00303Q3SY05 128 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 FIGNQ5HY92 759 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 TMEM164Q5U3C3 297 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 NKAIN2Q5VXU1 208 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 LRRC66Q68CR7 880 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 LRRC49Q8IUZ0 686 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 NDUFAF2Q8N183 169 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.11□□□□□ -0.31
RPS28-204ENST00000602140 TEX26Q8N6G2 289 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 EXTL1Q92935 676 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 SCAMP4Q969E2 229 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 AP2M1Q96CW1 435 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 NUP85Q9BW27 656 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 CDH19Q9H159 772 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 ABCG8Q9H221 673 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 TMEM98Q9Y2Y6 226 aa13.11□□□□□ -0.31
RPS28-204ENST00000602140 BZW2Q9Y6E2 419 aaKnown RBP13.11□□□□□ -0.31
RPS28-204ENST00000602140 ARHGEF17Q96PE2 2063 aaPredicted RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 MFSD11O43934 449 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 FZD6O60353 706 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 MAP3K6O95382 1288 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 CD48P09326 243 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 CD82P27701 267 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 SSR1P43307 286 aaKnown RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 EPHB1P54762 984 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 PTSQ03393 145 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 NFATC3Q12968 1075 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 IQCB1Q15051 598 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 CLPPQ16740 277 aaPredicted RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 ADAMTSL4Q6UY14 1074 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 MARK2Q7KZI7 788 aaKnown RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 TRIM74Q86UV6 250 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 DTX1Q86Y01 620 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 JPH3Q8WXH2 748 aaPredicted RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 SCARF2Q96GP6 870 aaPredicted RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 CCDC74BQ96LY2 380 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 OR2M4Q96R27 311 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 ARHGAP9Q9BRR9 750 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 POLR1EQ9GZS1 481 aaKnown RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 RCOR3Q9P2K3 495 aaPredicted RBP13.1□□□□□ -0.31
RPS28-204ENST00000602140 PCDHGA4Q9Y5G9 962 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 BOD1L1Q8NFC6 3051 aa13.1□□□□□ -0.31
RPS28-204ENST00000602140 AHCTF1Q8WYP5 2266 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 IGHV1OR21-1A0A087WYE8 117 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 A0A087X0T9 212 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 A0A0J9YYE9 177 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 MYO1FO00160 1098 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 HGSO14964 777 aaPredicted RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 MATN3O15232 486 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 SLC28A2O43868 658 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 TRBC1P01850 177 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 ITGB2P05107 769 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 SERPING1P05155 500 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 CYP1A2P05177 515 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 FAM228BP0C875 321 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 FGF3P11487 239 aaPredicted RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 ZNF30P17039 623 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 WT1P19544 449 aaPredicted RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 MPSTP25325 297 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 GJC1P36383 396 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 GARSP41250 739 aaKnown RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 LIMK2P53671 638 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 DSC2Q02487 901 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 IHHQ14623 411 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 NFKBIBQ15653 356 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 HADHQ16836 314 aaKnown RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 ATP13A4Q4VNC1 1196 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 PYCR3Q53H96 274 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 CCDC122Q5T0U0 273 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 NCBP2-AS2Q69YL0 99 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 CAVIN1Q6NZI2 390 aaKnown RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 ZNF765Q7L2R6 523 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 ZSCAN1Q8NBB4 408 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 OR4D9Q8NGE8 314 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 FAM71BQ8TC56 605 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 CPLX3Q8WVH0 158 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 MAML1Q92585 1016 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 SYN2Q92777 582 aaPredicted RBP13.09□□□□□ -0.31
RPS28-204ENST00000602140 TAAR9Q96RI9 348 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 AGAP2Q99490 1192 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 B3GNT4Q9C0J1 378 aa13.09□□□□□ -0.31
RPS28-204ENST00000602140 RBM22Q9NW64 420 aaKnown RBP eCLIP13.09□□□□□ -0.31
RPS28-204ENST00000602140 CHKBQ9Y259 395 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms