RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LMO7DNF2Z398 122 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 K7ESM1 405 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 PSMD3O43242 534 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 SLC4A1P02730 911 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 ATXN1LP0C7T5 689 aaKnown RBP19.29■□□□□ 0.68
UPF1-212ENST00000601689 GM2AP17900 193 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 E2F1Q01094 437 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 ALG11Q2TAA5 492 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 ADAMTSL4Q6UY14 1074 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 LYSMD3Q7Z3D4 306 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 SLC13A5Q86YT5 568 aaPredicted RBP19.29■□□□□ 0.68
UPF1-212ENST00000601689 RBFAQ8N0V3 343 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 FAM181AQ8N9Y4 354 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 HERPUD2Q9BSE4 406 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 CYP4F12Q9HCS2 524 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 CACNA1AO00555 2505 aa19.29■□□□□ 0.68
UPF1-212ENST00000601689 ARID1BQ8NFD5 2236 aaPredicted RBP19.29■□□□□ 0.68
UPF1-212ENST00000601689 GOLGA4Q13439 2230 aaKnown RBP19.28■□□□□ 0.68
UPF1-212ENST00000601689 PRSS38A1L453 326 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 F5H423 210 aaPredicted RBP19.28■□□□□ 0.68
UPF1-212ENST00000601689 ASMTLO95671 621 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 SHC2P98077 582 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 C1orf61Q13536 156 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 PTPRRQ15256 657 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 SLC1A5Q15758 541 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 PARP6Q2NL67 630 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 TPRG1LQ5T0D9 272 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 KDELC1Q6UW63 502 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 KDM7AQ6ZMT4 941 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 TMC3Q7Z5M5 1100 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 SLC25A41Q8N5S1 370 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 PNPLA1Q8N8W4 532 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 CCDC110Q8TBZ0 833 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 SCAMP4Q969E2 229 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 HIC2Q96JB3 615 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 MRGPRX2Q96LB1 330 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 ZSCAN5AQ9BUG6 496 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 LRRC61Q9BV99 259 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 RIOK2Q9BVS4 552 aaKnown RBP19.28■□□□□ 0.68
UPF1-212ENST00000601689 SPATA16Q9BXB7 569 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 C10orf88Q9H8K7 445 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 HOMER3Q9NSC5 361 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 FEZ2Q9UHY8 353 aaPredicted RBP19.28■□□□□ 0.68
UPF1-212ENST00000601689 KLF15Q9UIH9 416 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 ZNF148Q9UQR1 794 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 PKP3Q9Y446 797 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 JRKLQ9Y4A0 524 aa19.28■□□□□ 0.68
UPF1-212ENST00000601689 TMEM202A6NGA9 273 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 TRIM38O00635 465 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 ACP1P24666 158 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 PSMB4P28070 264 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 PDE1BQ01064 536 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 NR0B2Q15466 257 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 DEFB133Q30KQ1 61 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 PROX2Q3B8N5 592 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 SIRPB2Q5JXA9 342 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 PDPK2PQ6A1A2 396 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 GLT6D1Q7Z4J2 308 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 TAF8Q7Z7C8 310 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 SLCO6A1Q86UG4 719 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 CHCHD4Q8N4Q1 142 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 FAM71DQ8N9W8 422 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 APOLD1Q96LR9 279 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 SMIM14Q96QK8 99 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 GSDMCQ9BYG8 508 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 CARS2Q9HA77 564 aaKnown RBP19.27■□□□□ 0.68
UPF1-212ENST00000601689 ZKSCAN5Q9Y2L8 839 aa19.27■□□□□ 0.68
UPF1-212ENST00000601689 C2orf81A6NN90 581 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 KIF5CO60282 957 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 PPFIA2O75334 1257 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 GAS8O95995 478 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 PIRTP0C851 137 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 CKMT1AP12532 417 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 HMGCLP35914 325 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 DCDC1P59894 354 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 ILF3Q12906 894 aaKnown RBP eCLIP19.26■□□□□ 0.67
UPF1-212ENST00000601689 DNAJC3Q13217 504 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 CDKN3Q16667 212 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 ZNF569Q5MCW4 686 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 C6orf132Q5T0Z8 1188 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 RAB44Q7Z6P3 723 aaPredicted RBP19.26■□□□□ 0.67
UPF1-212ENST00000601689 CCDC89Q8N998 374 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 SLC35B2Q8TB61 432 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 BLOC1S5Q8TDH9 187 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 OXNAD1Q96HP4 312 aaPredicted RBP19.26■□□□□ 0.67
UPF1-212ENST00000601689 TMEM121Q9BTD3 319 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 FICDQ9BVA6 458 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 SCNM1Q9BWG6 230 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 LGR4Q9BXB1 951 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 ABCG4Q9H172 646 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 FGF22Q9HCT0 170 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 NEUROG3Q9Y4Z2 214 aa19.26■□□□□ 0.67
UPF1-212ENST00000601689 A0A0U1RQS6 177 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 YY2O15391 372 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 HYAL3O43820 417 aaPredicted RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 CEP104O60308 925 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 GCATO75600 419 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 IVLP07476 585 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 LMAN1P49257 510 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 ACADVLP49748 655 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms