RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RALYLQ86SE5 291 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 ADGRG5Q8IZF4 528 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 MINDY1Q8N5J2 469 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.91□□□□□ -1.46
VPS53-219ENST00000576019 PSPC1Q8WXF1 523 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 CENPTQ96BT3 561 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ATP6V0BQ99437 205 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ELOVL1Q9BW60 279 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 REXO4Q9GZR2 422 aaKnown RBP5.91□□□□□ -1.46
VPS53-219ENST00000576019 PCED1AQ9H1Q7 454 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 PARD6AQ9NPB6 346 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 NRIP3Q9NQ35 241 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 SLC22A11Q9NSA0 550 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 OGFRQ9NZT2 677 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 LRIT1Q9P2V4 623 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 CTNNAL1Q9UBT7 734 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 CTNNA3Q9UI47 895 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 SLC25A13Q9UJS0 675 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 ADAM29Q9UKF5 820 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 TICRRQ7Z2Z1 1910 aa5.91□□□□□ -1.46
VPS53-219ENST00000576019 SETD2Q9BYW2 2564 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 CYP3A7-CYP3A51PA0A087WV96 503 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 C3orf70A6NLC5 250 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 LRRC53A6NM62 1247 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 C17orf100A8MU93 164 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 E7ENX8 843 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CAPN9O14815 690 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PPM1DO15297 605 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PI15O43692 258 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PRICKLE3O43900 615 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 HBP1O60381 514 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 RECQL5O94762 991 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 PENKP01210 267 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 HLA-DOAP06340 250 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 HMOX1P09601 288 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CYP3A7P24462 503 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 MAPK3P27361 379 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 POU1F1P28069 291 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 HOXC8P31273 242 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 MCM5P33992 734 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PTPN9P43378 593 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CSE1LP55060 971 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 TAP2Q03519 686 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 DEUP1Q05D60 604 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 SCN1BQ07699 218 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TEFQ10587 303 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TUBB3Q13509 450 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 NFYCQ13952 458 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 RCN2Q14257 317 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 ALG11Q2TAA5 492 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 ZNF792Q3KQV3 632 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 ZNF568Q3ZCX4 644 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 ZRANB3Q5FWF4 1079 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 SPDYAQ5MJ70 313 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CST9LP1Q5W188 147 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TADA2BQ86TJ2 420 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 AACSQ86V21 672 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CAND1Q86VP6 1230 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 UBALD2Q8IYN6 164 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 SYCP3Q8IZU3 236 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 SIX6OS1Q8N1H7 587 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 DPP10Q8N608 796 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CTCFLQ8NI51 663 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 C2CD4CQ8TF44 421 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 MZB1Q8WU39 189 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 ATP6V0A1Q93050 837 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TMEM125Q96AQ2 219 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 VPS50Q96JG6 964 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PPP1R13BQ96KQ4 1090 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TGS1Q96RS0 853 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 MRPL1Q9BYD6 325 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 TNMDQ9H2S6 317 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TSPY26PQ9H489 355 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PLK3Q9H4B4 646 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 CDCP1Q9H5V8 836 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 TDRD3Q9H7E2 651 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 GCM1Q9NP62 436 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 MID1IP1Q9NPA3 183 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 NCKIPSDQ9NZQ3 722 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 XPO7Q9UIA9 1087 aaKnown RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 MBD1Q9UIS9 605 aaPredicted RBP5.9□□□□□ -1.46
VPS53-219ENST00000576019 MTUS1Q9ULD2 1270 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 PMF1-BGLAPU3KQ54 211 aa5.9□□□□□ -1.46
VPS53-219ENST00000576019 RFX7Q2KHR2 1363 aa5.9□□□□□ -1.47
VPS53-219ENST00000576019 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 CCDC151A5D8V7 595 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 FAM90A8PA6NJQ4 464 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 A6NL46 340 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 OR6C76A6NM76 312 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 A8MVJ9 347 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 KIAA1324LA8MWY0 1029 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 MATN2O00339 956 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 PRPF4O43172 522 aaKnown RBP eCLIP5.89□□□□□ -1.471e-8■■□□□ 11.6
VPS53-219ENST00000576019 PAPSS1O43252 624 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 STX6O43752 255 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 PPFIA2O75334 1257 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 FAM90A13PP0C7W8 464 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 FAM90A24PP0C7X0 464 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 EDN2P20800 178 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 RPL13P26373 211 aaKnown RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms