RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.96■□□□□ 0.47
CLK3-227ENST00000570296 FAM131BQ86XD5 332 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 ZNF354CQ86Y25 554 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 CISD2Q8N5K1 135 aaKnown RBP17.96■□□□□ 0.47
CLK3-227ENST00000570296 SCARF2Q96GP6 870 aaPredicted RBP17.96■□□□□ 0.47
CLK3-227ENST00000570296 OR2M4Q96R27 311 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 OR6C1Q96RD1 312 aa17.96■□□□□ 0.47
CLK3-227ENST00000570296 BARD1Q99728 777 aaKnown RBP17.96■□□□□ 0.47
CLK3-227ENST00000570296 TRBV23OR9-2A0A075B6M9 112 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 RASA4BC9J798 803 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 TOX3O15405 576 aaPredicted RBP17.95■□□□□ 0.46
CLK3-227ENST00000570296 LRRTM2O43300 516 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 RASA4O43374 803 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 FGF5P12034 268 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 CMA1P23946 247 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 SCNN1AP37088 669 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 CDK18Q07002 472 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 LRP8Q14114 963 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 ATL3Q6DD88 541 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 CAMK1DQ8IU85 385 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 FDCSPQ8NFU4 85 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 NUS1Q96E22 293 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 COQ10AQ96MF6 247 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 NUDT9Q9BW91 350 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 UBE2TQ9NPD8 197 aaPredicted RBP17.95■□□□□ 0.46
CLK3-227ENST00000570296 NEU3Q9UQ49 428 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 PLEKHM1Q9Y4G2 1056 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 ZGRF1Q86YA3 2104 aa17.95■□□□□ 0.46
CLK3-227ENST00000570296 SPAG6O75602 509 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 C9P02748 559 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 TEAD1P28347 426 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 SERPINA4P29622 427 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 MAPK9P45984 424 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 POLD2P49005 469 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 LRRC63Q05C16 580 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 NFATC2Q13469 925 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 CYTH1Q15438 398 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 PLEKHN1Q494U1 663 aaPredicted RBP17.94■□□□□ 0.46
CLK3-227ENST00000570296 ENOSF1Q7L5Y1 443 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 ST6GALNAC3Q8NDV1 305 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 ECHDC3Q96DC8 303 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 C9orf72Q96LT7 481 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 SMAD5Q99717 465 aaKnown RBP17.94■□□□□ 0.46
CLK3-227ENST00000570296 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.94■□□□□ 0.46
CLK3-227ENST00000570296 ATP13A3Q9H7F0 1226 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 TMEM63CQ9P1W3 806 aa17.94■□□□□ 0.46
CLK3-227ENST00000570296 ZG16O60844 167 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 LPOP22079 712 aaPredicted RBP17.93■□□□□ 0.46
CLK3-227ENST00000570296 PRCPP42785 496 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 PTGIRP43119 386 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 SYKP43405 635 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 PMS1P54277 932 aaKnown RBP17.93■□□□□ 0.46
CLK3-227ENST00000570296 RPS15P62841 145 aaKnown RBP17.93■□□□□ 0.46
CLK3-227ENST00000570296 POLR2LP62875 67 aaKnown RBP17.93■□□□□ 0.46
CLK3-227ENST00000570296 SH3BP2P78314 561 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 IL10RAQ13651 578 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 LAMB3Q13751 1172 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 COBLL1Q53SF7 1204 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 CYB5D1Q6P9G0 228 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 PPP1R3BQ86XI6 285 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 TBC1D31Q96DN5 1066 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 ELMO2Q96JJ3 720 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 KLC2Q9H0B6 622 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 GPR83Q9NYM4 423 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 C5AR2Q9P296 337 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 CFAP45Q9UL16 551 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 B3GNT3Q9Y2A9 372 aa17.93■□□□□ 0.46
CLK3-227ENST00000570296 MDC1Q14676 2089 aaKnown RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 DIAPH2O60879 1101 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 PLEKP08567 350 aaPredicted RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 FLT3P36888 993 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 RPS18P62269 152 aaKnown RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 FOXD4L6Q3SYB3 417 aaPredicted RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 FOXD4L3Q6VB84 417 aaPredicted RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 GLIS1Q8NBF1 620 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 UBE2Q2Q8WVN8 375 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 RUFY1Q96T51 708 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 NOL6Q9H6R4 1146 aaKnown RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 RCOR1Q9UKL0 485 aa17.92■□□□□ 0.46
CLK3-227ENST00000570296 COPG1Q9Y678 874 aaKnown RBP17.92■□□□□ 0.46
CLK3-227ENST00000570296 BECN2A8MW95 431 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 LRIG2O94898 1065 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 EML2O95834 649 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 CSNK1DP48730 415 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 GFERP55789 205 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 CCDC40Q4G0X9 1142 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 PYCR3Q53H96 274 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 CRB2Q5IJ48 1285 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 FAM102AQ5T9C2 384 aaPredicted RBP17.91■□□□□ 0.46
CLK3-227ENST00000570296 DOK6Q6PKX4 331 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 SLC9B2Q86UD5 537 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 AVL9Q8NBF6 648 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 CEP63Q96MT8 703 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 COPG2Q9UBF2 871 aa17.91■□□□□ 0.46
CLK3-227ENST00000570296 UBA2Q9UBT2 640 aaPredicted RBP17.91■□□□□ 0.46
CLK3-227ENST00000570296 KLF2Q9Y5W3 355 aaPredicted RBP17.91■□□□□ 0.46
CLK3-227ENST00000570296 LILRA5A6NI73 299 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM72CH0Y354 149 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 SLC2A4P14672 509 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 ADRA1BP35368 520 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms