RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TMEM139Q8IV31 216 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 CCDC50Q8IVM0 306 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 FAM46DQ8NEK8 389 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 GPR156Q8NFN8 814 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 OR6C4Q8NGE1 309 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 WDR48Q8TAF3 677 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 GPBAR1Q8TDU6 330 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 CCDC3Q9BQI4 270 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 LACRTQ9GZZ8 138 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 CARS2Q9HA77 564 aaKnown RBP20.22■□□□□ 0.83
CLK3-225ENST00000569063 GLOD4Q9HC38 313 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 RAXQ9Y2V3 346 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 PCDHA3Q9Y5H8 950 aa20.22■□□□□ 0.83
CLK3-225ENST00000569063 RGSL1A5PLK6 1076 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 PJA2O43164 708 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 MTSS1O43312 755 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 CSO75390 466 aaKnown RBP20.21■□□□□ 0.83
CLK3-225ENST00000569063 TCEA3O75764 348 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 IVLP07476 585 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 SPINT3P49223 89 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 VAV2P52735 878 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 COPS2P61201 443 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 WASHC5Q12768 1159 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 CCL4L1Q8NHW4 92 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 CCHCR1Q8TD31 782 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 GRAMD1AQ96CP6 724 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 SCARF2Q96GP6 870 aaPredicted RBP20.21■□□□□ 0.83
CLK3-225ENST00000569063 AGAP2Q99490 1192 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 RIOK2Q9BVS4 552 aaKnown RBP20.21■□□□□ 0.83
CLK3-225ENST00000569063 TRNAU1APQ9NX07 287 aaKnown RBP20.21■□□□□ 0.83
CLK3-225ENST00000569063 SUFUQ9UMX1 484 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 EFR3BQ9Y2G0 817 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 PCDHB1Q9Y5F3 818 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 AK5Q9Y6K8 562 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 KNTC1P50748 2209 aa20.21■□□□□ 0.83
CLK3-225ENST00000569063 POLD2P49005 469 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 NAP1L1P55209 391 aaKnown RBP20.2■□□□□ 0.82
CLK3-225ENST00000569063 CDK18Q07002 472 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 GALNT3Q14435 633 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 ISXQ2M1V0 245 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 BBS12Q6ZW61 710 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 ZC3H18Q86VM9 953 aaKnown RBP20.2■□□□□ 0.82
CLK3-225ENST00000569063 ACRBPQ8NEB7 543 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 SPATA22Q8NHS9 363 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 KIAA1524Q8TCG1 905 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 PTCD2Q8WV60 388 aaKnown RBP20.2■□□□□ 0.82
CLK3-225ENST00000569063 COX14Q96I36 57 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 HIC2Q96JB3 615 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 WDR24Q96S15 920 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 GSDMCQ9BYG8 508 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 MAGEE1Q9HCI5 957 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 PKD2L2Q9NZM6 624 aa20.2■□□□□ 0.82
CLK3-225ENST00000569063 CCDC66A2RUB6 948 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 HACD1B0YJ81 288 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 NOBOXO60393 691 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 MT-CYBP00156 380 aaPredicted RBP20.19■□□□□ 0.82
CLK3-225ENST00000569063 CTNNA2P26232 953 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 CD68P34810 354 aaPredicted RBP20.19■□□□□ 0.82
CLK3-225ENST00000569063 GNPDA1P46926 289 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 ILF3Q12906 894 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLK3-225ENST00000569063 XRCC4Q13426 336 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 PCSK7Q16549 785 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 HENMT1Q5T8I9 393 aaKnown RBP20.19■□□□□ 0.82
CLK3-225ENST00000569063 RBM44Q6ZP01 1051 aaKnown RBP20.19■□□□□ 0.82
CLK3-225ENST00000569063 KDELC2Q7Z4H8 507 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 NRROSQ86YC3 692 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 LRRC57Q8N9N7 239 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 CCDC74AQ96AQ1 378 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 EID2BQ96D98 161 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 VAT1Q99536 393 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 HEMGNQ9BXL5 484 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 DPEP2Q9H4A9 486 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 FAM83DQ9H4H8 585 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 GPSM3Q9Y4H4 160 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 ZFHX4Q86UP3 3567 aa20.19■□□□□ 0.82
CLK3-225ENST00000569063 COL27A1Q8IZC6 1860 aaPredicted RBP20.18■□□□□ 0.82
CLK3-225ENST00000569063 APOC4-APOC2K7ER74 178 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 NTN3O00634 580 aaPredicted RBP20.18■□□□□ 0.82
CLK3-225ENST00000569063 USP12O75317 370 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 APOC2P02655 101 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 GLB1P16278 677 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 HLTFQ14527 1009 aaKnown RBP eCLIP20.18■□□□□ 0.82
CLK3-225ENST00000569063 CERCAMQ5T4B2 595 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 LYSMD3Q7Z3D4 306 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 TMC3Q7Z5M5 1100 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 HTR3CQ8WXA8 447 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 QKIQ96PU8 341 aaKnown RBP eCLIP20.18■□□□□ 0.82
CLK3-225ENST00000569063 ZFYVE1Q9HBF4 777 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 SPATS2LQ9NUQ6 558 aaKnown RBP20.18■□□□□ 0.82
CLK3-225ENST00000569063 RABGEF1Q9UJ41 708 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 APPL1Q9UKG1 709 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 CNOT6Q9ULM6 557 aaKnown RBP20.18■□□□□ 0.82
CLK3-225ENST00000569063 TMEM98Q9Y2Y6 226 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 CFAP47Q6ZTR5 3102 aa20.18■□□□□ 0.82
CLK3-225ENST00000569063 ASXL3Q9C0F0 2248 aa20.17■□□□□ 0.82
CLK3-225ENST00000569063 GRID2IPA4D2P6 1211 aa20.17■□□□□ 0.82
CLK3-225ENST00000569063 CASC3O15234 703 aaKnown RBP20.17■□□□□ 0.82
CLK3-225ENST00000569063 BRINP1O60477 761 aa20.17■□□□□ 0.82
CLK3-225ENST00000569063 NDST3O95803 873 aa20.17■□□□□ 0.82
CLK3-225ENST00000569063 PNLIPP16233 465 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms