RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 PTPN3P26045 913 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 GPR1P46091 355 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 GALNT3Q14435 633 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 TEX44Q53QW1 395 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 NT5DC3Q86UY8 548 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 ACRBPQ8NEB7 543 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 SPATA22Q8NHS9 363 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 TADA1Q96BN2 335 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 WDR24Q96S15 920 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 MLPHQ9BV36 600 aaPredicted RBP18.32■□□□□ 0.52
CLN3-237ENST00000569030 RIOK2Q9BVS4 552 aaKnown RBP18.32■□□□□ 0.52
CLN3-237ENST00000569030 SLC25A51Q9H1U9 297 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 SUDS3Q9H7L9 328 aaPredicted RBP18.32■□□□□ 0.52
CLN3-237ENST00000569030 CARS2Q9HA77 564 aaKnown RBP18.32■□□□□ 0.52
CLN3-237ENST00000569030 RABGEF1Q9UJ41 708 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 RALYQ9UKM9 306 aaKnown RBP18.32■□□□□ 0.52
CLN3-237ENST00000569030 ST14Q9Y5Y6 855 aa18.32■□□□□ 0.52
CLN3-237ENST00000569030 SCN8AQ9UQD0 1980 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 MT-CYBP00156 380 aaPredicted RBP18.31■□□□□ 0.52
CLN3-237ENST00000569030 WASHC5Q12768 1159 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 OGFOD3Q6PK18 319 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 ADAMTSL4Q6UY14 1074 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 BZW1Q7L1Q6 419 aaKnown RBP18.31■□□□□ 0.52
CLN3-237ENST00000569030 ZNF765Q7L2R6 523 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 TRIM74Q86UV6 250 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 NLRP8Q86W28 1048 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 NRROSQ86YC3 692 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 TMEM139Q8IV31 216 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 CCDC50Q8IVM0 306 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 NRSN1Q8IZ57 195 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 FAM46DQ8NEK8 389 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 GPR156Q8NFN8 814 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 EXD1Q8NHP7 514 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 TFB1MQ8WVM0 346 aaKnown RBP18.31■□□□□ 0.52
CLN3-237ENST00000569030 NAT6Q93015 286 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 HAUS1Q96CS2 278 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 EID2BQ96D98 161 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 DEPDC7Q96QD5 511 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 CCDC3Q9BQI4 270 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 HEMGNQ9BXL5 484 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 ADGRE3Q9BY15 652 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 GLOD4Q9HC38 313 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 DNPEPQ9ULA0 475 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 SUFUQ9UMX1 484 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 SLC17A4Q9Y2C5 497 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 TMEM98Q9Y2Y6 226 aa18.31■□□□□ 0.52
CLN3-237ENST00000569030 IGSF10Q6WRI0 2623 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 C1orf232A0A0U1RR37 186 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 NOBOXO60393 691 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 CD68P34810 354 aaPredicted RBP18.3■□□□□ 0.52
CLN3-237ENST00000569030 GNPDA1P46926 289 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 PCSK7Q16549 785 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 ISXQ2M1V0 245 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 DOK6Q6PKX4 331 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 ZC3H18Q86VM9 953 aaKnown RBP18.3■□□□□ 0.52
CLN3-237ENST00000569030 GPBAR1Q8TDU6 330 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 P3H4Q92791 437 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 CCDC74AQ96AQ1 378 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 TEKT5Q96M29 485 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 BAG1Q99933 345 aaPredicted RBP18.3■□□□□ 0.52
CLN3-237ENST00000569030 HERPUD2Q9BSE4 406 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 SPATS2LQ9NUQ6 558 aaKnown RBP18.3■□□□□ 0.52
CLN3-237ENST00000569030 CNOT6Q9ULM6 557 aaKnown RBP18.3■□□□□ 0.52
CLN3-237ENST00000569030 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-237ENST00000569030 GPSM3Q9Y4H4 160 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 PCDHA3Q9Y5H8 950 aa18.3■□□□□ 0.52
CLN3-237ENST00000569030 BTNL10A8MVZ5 291 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 INPP4BO15327 924 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 PJA2O43164 708 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 TLX3O43711 291 aaPredicted RBP18.29■□□□□ 0.52
CLN3-237ENST00000569030 BRINP1O60477 761 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 USP12O75317 370 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 PIRTP0C851 137 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 AK4P27144 223 aaPredicted RBP18.29■□□□□ 0.52
CLN3-237ENST00000569030 CTNNA1P35221 906 aaKnown RBP18.29■□□□□ 0.52
CLN3-237ENST00000569030 SPINT3P49223 89 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 CDK18Q07002 472 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 C19orf48Q6RUI8 117 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 LYSMD3Q7Z3D4 306 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 SPC24Q8NBT2 197 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 SCARF2Q96GP6 870 aaPredicted RBP18.29■□□□□ 0.52
CLN3-237ENST00000569030 RBM41Q96IZ5 413 aaKnown RBP18.29■□□□□ 0.52
CLN3-237ENST00000569030 HIC2Q96JB3 615 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 DPEP2Q9H4A9 486 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 UBP1Q9NZI7 540 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 PLEKHM1Q9Y4G2 1056 aa18.29■□□□□ 0.52
CLN3-237ENST00000569030 A0A0U1RQJ8 604 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 A0A1W2PNU3 283 aaPredicted RBP18.28■□□□□ 0.52
CLN3-237ENST00000569030 B4DGG1 531 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 PMPCBO75439 489 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 IPO7O95373 1038 aaKnown RBP18.28■□□□□ 0.52
CLN3-237ENST00000569030 MPOP05164 745 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 IVLP07476 585 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 ADCY8P40145 1251 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 VAV2P52735 878 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 NAP1L1P55209 391 aaKnown RBP18.28■□□□□ 0.52
CLN3-237ENST00000569030 CTBSQ01459 385 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 SLC14A2Q15849 920 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 PPP2R5EQ16537 467 aa18.28■□□□□ 0.52
CLN3-237ENST00000569030 RBM44Q6ZP01 1051 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms