RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ILVBLA1L0T0 632 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PIPSLA2A3N6 862 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GRID2IPA4D2P6 1211 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ARHGEF35A5YM69 484 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 OR6C74A6NCV1 312 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LRRC14BA6NHZ5 514 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZNF98A6NK75 572 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TSPY2A6NKD2 308 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 C16orf96A6NNT2 1141 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 K7EPI3 171 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PSMD11O00231 422 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CCRL2O00421 344 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LAD1O00515 517 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PCDH17O14917 1159 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 VILLO15195 856 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ACOX3O15254 700 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PLOD3O60568 738 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PLA2G6O60733 806 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CCDC22O60826 627 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DKC1O60832 514 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS35-208ENST00000568612 ATG13O75143 517 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PTP4A3O75365 173 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CIAO1O76071 339 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MT-ND3P03897 115 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 URODP06132 367 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 APOA4P06727 396 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 POLR2MP0CAP2 368 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TSPY3P0CV98 308 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TSPY8P0CW00 308 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SMIM18P0DKX4 95 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MYL4P12829 197 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GFAPP14136 432 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ATP6V1B1P15313 513 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GAP43P17677 238 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 BMP5P22003 454 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CTNNA2P26232 953 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PON1P27169 355 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TALDO1P37837 337 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PLA2G5P39877 138 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GP5P40197 560 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 RAD52P43351 418 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PHKA1P46020 1223 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KCNJ5P48544 419 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NPY2RP49146 381 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ARFIP1P53367 373 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SLC12A2P55011 1212 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GPX6P59796 221 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 STX1BP61266 288 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PSMC5P62195 406 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 UBE2IP63279 158 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 EEF1A1P68104 462 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 BEX3Q00994 111 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TSPY1Q01534 308 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GHRHRQ02643 423 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GCNT1Q02742 428 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 EEF1A2Q05639 463 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 SPAG1Q07617 926 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 AIMP1Q12904 312 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 HERC3Q15034 1050 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LRRC41Q15345 812 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 AANATQ16613 207 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MAPKAPK3Q16644 382 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MAPK6Q16659 721 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MAJINQ3KP22 176 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 C5orf22Q49AR2 442 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GTDC1Q4AE62 458 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZC2HC1CQ53FD0 456 aaPredicted RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 FBXO48Q5FWF7 155 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 EFHC1Q5JVL4 640 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 INTS11Q5TA45 600 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 C6orf163Q5TEZ5 329 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 AGBL2Q5U5Z8 902 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ABHD17BQ5VST6 288 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 EEF1A1P5Q5VTE0 462 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CACHD1Q5VU97 1274 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PM20D1Q6GTS8 502 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PLEKHA7Q6IQ23 1121 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZNF425Q6IV72 752 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ARHGAP11AQ6P4F7 1023 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 Q6YL49 198 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MACC1Q6ZN28 852 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LRRC74BQ6ZQY2 392 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 UTS2BQ765I0 119 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 EPM2AIP1Q7L775 607 aaPredicted RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 TRAPPC11Q7Z392 1133 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TMPRSS9Q7Z410 1059 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SLC9B2Q86UD5 537 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 COMTD1Q86VU5 262 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CDR2LQ86X02 465 aaPredicted RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 CAMK1DQ8IU85 385 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 BBS7Q8IWZ6 715 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NELFCDQ8IXH7 590 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DIS3L2Q8IYB7 885 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 CENPSQ8N2Z9 138 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LIX1Q8N485 282 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DNAAF3Q8N9W5 541 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SLC17A8Q8NDX2 589 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 RFWD2Q8NHY2 731 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 FBXO30Q8TB52 745 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LRRC8CQ8TDW0 803 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms