RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 BRD8Q9H0E9 1235 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 SPATS2LQ9NUQ6 558 aaKnown RBP20.66■□□□□ 0.9
CLN3-219ENST00000565778 TRNAU1APQ9NX07 287 aaKnown RBP20.66■□□□□ 0.9
CLN3-219ENST00000565778 LRIT1Q9P2V4 623 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 TMEM98Q9Y2Y6 226 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 ASXL3Q9C0F0 2248 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 ADAMTS20P59510 1910 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 C1orf232A0A0U1RR37 186 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 NTN3O00634 580 aaPredicted RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 NOBOXO60393 691 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 RPLP0P05388 317 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 PYGLP06737 847 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 RBMS1P29558 406 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 HADHBP55084 474 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 CCDC173Q0VFZ6 552 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 TFDP2Q14188 446 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 LLGL1Q15334 1064 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 QPCTQ16769 361 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 C14orf28Q4W4Y0 310 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 KAZNQ674X7 775 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 ADAMTSL4Q6UY14 1074 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 BZW1Q7L1Q6 419 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 ZNF765Q7L2R6 523 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 NT5DC3Q86UY8 548 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 NRROSQ86YC3 692 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 SFTPA2Q8IWL1 248 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 EXD1Q8NHP7 514 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 CCHCR1Q8TD31 782 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 HIC2Q96JB3 615 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 AGAP2Q99490 1192 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 RIOK2Q9BVS4 552 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 LRRN3Q9H3W5 708 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 LUC7LQ9NQ29 371 aaKnown RBP20.65■□□□□ 0.9
CLN3-219ENST00000565778 SLC17A4Q9Y2C5 497 aa20.65■□□□□ 0.9
CLN3-219ENST00000565778 INPP4BO15327 924 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 LCA5LO95447 670 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 ASMTLO95671 621 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 IVLP07476 585 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 AK4P27144 223 aaPredicted RBP20.64■□□□□ 0.89
CLN3-219ENST00000565778 CYLC1P35663 651 aaPredicted RBP20.64■□□□□ 0.89
CLN3-219ENST00000565778 ADCY8P40145 1251 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 NR2C2P49116 596 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 ZDHHC1Q8WTX9 485 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 PTCD2Q8WV60 388 aaKnown RBP20.64■□□□□ 0.89
CLN3-219ENST00000565778 NAF1Q96HR8 494 aaKnown RBP20.64■□□□□ 0.89
CLN3-219ENST00000565778 LYSMD1Q96S90 227 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 TAAR2Q9P1P5 351 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 SAE1Q9UBE0 346 aaPredicted RBP20.64■□□□□ 0.89
CLN3-219ENST00000565778 APPL1Q9UKG1 709 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 TFR2Q9UP52 801 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 RNF215Q9Y6U7 377 aa20.64■□□□□ 0.89
CLN3-219ENST00000565778 PSTPIP1O43586 416 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 CST8O60676 142 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 DXOO77932 396 aaKnown RBP20.63■□□□□ 0.89
CLN3-219ENST00000565778 ZRANB2O95218 330 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-219ENST00000565778 SOD1P00441 154 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 FGF1P05230 155 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 PNLIPP16233 465 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 CDKN2BP42772 138 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 ZNF75DP51815 510 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 ERVPABLB-1P60509 514 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 CTBSQ01459 385 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 PEX6Q13608 980 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 GALNT3Q14435 633 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 HLTFQ14527 1009 aaKnown RBP eCLIP20.63■□□□□ 0.89
CLN3-219ENST00000565778 CERCAMQ5T4B2 595 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 SLC30A9Q6PML9 568 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 SPOCD1Q6ZMY3 1216 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 MARK2Q7KZI7 788 aaKnown RBP20.63■□□□□ 0.89
CLN3-219ENST00000565778 TRIM74Q86UV6 250 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 CCNJLQ8IV13 435 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 RAVER1Q8IY67 606 aaKnown RBP20.63■□□□□ 0.89
CLN3-219ENST00000565778 ZNF248Q8NDW4 579 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 WDR36Q8NI36 951 aaKnown RBP20.63■□□□□ 0.89
CLN3-219ENST00000565778 IMP4Q96G21 291 aaKnown RBP20.63■□□□□ 0.89
CLN3-219ENST00000565778 CRELD1Q96HD1 420 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 SLC46A1Q96NT5 459 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 OLFM3Q96PB7 478 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 RBSNQ9H1K0 784 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 SLC25A51Q9H1U9 297 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 GOLPH3Q9H4A6 298 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 FAM83DQ9H4H8 585 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 THSD1Q9NS62 852 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 PKD2L2Q9NZM6 624 aa20.63■□□□□ 0.89
CLN3-219ENST00000565778 A0A1W2PNU3 283 aaPredicted RBP20.62■□□□□ 0.89
CLN3-219ENST00000565778 A0A1W2PQM1 296 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 TMX2-CTNND1H3BSU7 103 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 NUDT21O43809 227 aaKnown RBP20.62■□□□□ 0.89
CLN3-219ENST00000565778 SPINT3P49223 89 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 PCBP4P57723 403 aaKnown RBP20.62■□□□□ 0.89
CLN3-219ENST00000565778 BIRC2Q13490 618 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 PCSK7Q16549 785 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 TEX44Q53QW1 395 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 CCDC70Q6NSX1 233 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 RCOR2Q8IZ40 523 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 TFB1MQ8WVM0 346 aaKnown RBP20.62■□□□□ 0.89
CLN3-219ENST00000565778 P3H4Q92791 437 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 EPB41L5Q9HCM4 733 aa20.62■□□□□ 0.89
CLN3-219ENST00000565778 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-219ENST00000565778 PLEKHM1Q9Y4G2 1056 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms