RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 PTPN3P26045 913 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 GPR1P46091 355 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 GALNT3Q14435 633 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 TEX44Q53QW1 395 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 NT5DC3Q86UY8 548 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 ACRBPQ8NEB7 543 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 SPATA22Q8NHS9 363 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 TADA1Q96BN2 335 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 WDR24Q96S15 920 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 MLPHQ9BV36 600 aaPredicted RBP18.32■□□□□ 0.52
CLN3-214ENST00000565140 RIOK2Q9BVS4 552 aaKnown RBP18.32■□□□□ 0.52
CLN3-214ENST00000565140 SLC25A51Q9H1U9 297 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 SUDS3Q9H7L9 328 aaPredicted RBP18.32■□□□□ 0.52
CLN3-214ENST00000565140 CARS2Q9HA77 564 aaKnown RBP18.32■□□□□ 0.52
CLN3-214ENST00000565140 RABGEF1Q9UJ41 708 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 RALYQ9UKM9 306 aaKnown RBP18.32■□□□□ 0.52
CLN3-214ENST00000565140 ST14Q9Y5Y6 855 aa18.32■□□□□ 0.52
CLN3-214ENST00000565140 SCN8AQ9UQD0 1980 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 MT-CYBP00156 380 aaPredicted RBP18.31■□□□□ 0.52
CLN3-214ENST00000565140 WASHC5Q12768 1159 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 OGFOD3Q6PK18 319 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 ADAMTSL4Q6UY14 1074 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 BZW1Q7L1Q6 419 aaKnown RBP18.31■□□□□ 0.52
CLN3-214ENST00000565140 ZNF765Q7L2R6 523 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 TRIM74Q86UV6 250 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 NLRP8Q86W28 1048 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 NRROSQ86YC3 692 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 TMEM139Q8IV31 216 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 CCDC50Q8IVM0 306 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 NRSN1Q8IZ57 195 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 FAM46DQ8NEK8 389 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 GPR156Q8NFN8 814 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 EXD1Q8NHP7 514 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 TFB1MQ8WVM0 346 aaKnown RBP18.31■□□□□ 0.52
CLN3-214ENST00000565140 NAT6Q93015 286 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 HAUS1Q96CS2 278 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 EID2BQ96D98 161 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 DEPDC7Q96QD5 511 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 CCDC3Q9BQI4 270 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 HEMGNQ9BXL5 484 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 ADGRE3Q9BY15 652 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 GLOD4Q9HC38 313 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 DNPEPQ9ULA0 475 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 SUFUQ9UMX1 484 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 SLC17A4Q9Y2C5 497 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 TMEM98Q9Y2Y6 226 aa18.31■□□□□ 0.52
CLN3-214ENST00000565140 IGSF10Q6WRI0 2623 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 C1orf232A0A0U1RR37 186 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 NOBOXO60393 691 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 CD68P34810 354 aaPredicted RBP18.3■□□□□ 0.52
CLN3-214ENST00000565140 GNPDA1P46926 289 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 PCSK7Q16549 785 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 ISXQ2M1V0 245 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 DOK6Q6PKX4 331 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 ZC3H18Q86VM9 953 aaKnown RBP18.3■□□□□ 0.52
CLN3-214ENST00000565140 GPBAR1Q8TDU6 330 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 P3H4Q92791 437 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 CCDC74AQ96AQ1 378 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 TEKT5Q96M29 485 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 BAG1Q99933 345 aaPredicted RBP18.3■□□□□ 0.52
CLN3-214ENST00000565140 HERPUD2Q9BSE4 406 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 SPATS2LQ9NUQ6 558 aaKnown RBP18.3■□□□□ 0.52
CLN3-214ENST00000565140 CNOT6Q9ULM6 557 aaKnown RBP18.3■□□□□ 0.52
CLN3-214ENST00000565140 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-214ENST00000565140 GPSM3Q9Y4H4 160 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 PCDHA3Q9Y5H8 950 aa18.3■□□□□ 0.52
CLN3-214ENST00000565140 BTNL10A8MVZ5 291 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 INPP4BO15327 924 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 PJA2O43164 708 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 TLX3O43711 291 aaPredicted RBP18.29■□□□□ 0.52
CLN3-214ENST00000565140 BRINP1O60477 761 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 USP12O75317 370 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 PIRTP0C851 137 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 AK4P27144 223 aaPredicted RBP18.29■□□□□ 0.52
CLN3-214ENST00000565140 CTNNA1P35221 906 aaKnown RBP18.29■□□□□ 0.52
CLN3-214ENST00000565140 SPINT3P49223 89 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 CDK18Q07002 472 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 C19orf48Q6RUI8 117 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 LYSMD3Q7Z3D4 306 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 SPC24Q8NBT2 197 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 SCARF2Q96GP6 870 aaPredicted RBP18.29■□□□□ 0.52
CLN3-214ENST00000565140 RBM41Q96IZ5 413 aaKnown RBP18.29■□□□□ 0.52
CLN3-214ENST00000565140 HIC2Q96JB3 615 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 DPEP2Q9H4A9 486 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 UBP1Q9NZI7 540 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 PLEKHM1Q9Y4G2 1056 aa18.29■□□□□ 0.52
CLN3-214ENST00000565140 A0A0U1RQJ8 604 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 A0A1W2PNU3 283 aaPredicted RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 B4DGG1 531 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 PMPCBO75439 489 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 IPO7O95373 1038 aaKnown RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 MPOP05164 745 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 IVLP07476 585 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 ADCY8P40145 1251 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 VAV2P52735 878 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 NAP1L1P55209 391 aaKnown RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 CTBSQ01459 385 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 SLC14A2Q15849 920 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 PPP2R5EQ16537 467 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 RBM44Q6ZP01 1051 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms