RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 HEATR4Q86WZ0 1026 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 ZNF567Q8N184 647 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 SPATA22Q8NHS9 363 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 HES6Q96HZ4 224 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 APOLD1Q96LR9 279 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 PPP1R2P1Q96PQ5 205 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 ALS2CR12Q96Q35 445 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 TRIB3Q96RU7 358 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 ABCG8Q9H221 673 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 GRPEL1Q9HAV7 217 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 ZFYVE1Q9HBF4 777 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 MOSPD1Q9UJG1 213 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 UNC13CQ8NB66 2214 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 CEP295Q9C0D2 2601 aa13.36□□□□□ -0.27
CLK3-213ENST00000563842 USP24Q9UPU5 2620 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 SCN8AQ9UQD0 1980 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 GOLGA6L3A6NEY3 463 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 TMEM202A6NGA9 273 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 DDX3YO15523 660 aaKnown RBP13.35□□□□□ -0.27
CLK3-213ENST00000563842 GCATO75600 419 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 ANXA9O76027 345 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 GP1BAP07359 652 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 NFKB1P19838 968 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 RBL1P28749 1068 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 CD68P34810 354 aaPredicted RBP13.35□□□□□ -0.27
CLK3-213ENST00000563842 SPINT3P49223 89 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 GEMP55040 296 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 CDK3Q00526 305 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 MPP3Q13368 585 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 C1orf61Q13536 156 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 PEX6Q13608 980 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 GALNT3Q14435 633 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 PRPSAP1Q14558 356 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 PTPRRQ15256 657 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 C6orf132Q5T0Z8 1188 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 SEL1L2Q5TEA6 688 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 DHRS13Q6UX07 377 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 ADAMTSL4Q6UY14 1074 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 KDELC2Q7Z4H8 507 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 LRRC45Q96CN5 670 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 LGR4Q9BXB1 951 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 GPR63Q9BZJ6 419 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 TCEAL2Q9H3H9 227 aaPredicted RBP13.35□□□□□ -0.27
CLK3-213ENST00000563842 FAM83DQ9H4H8 585 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 TRABDQ9H4I3 376 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 HACD3Q9P035 362 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 RSPH14Q9UHP6 348 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 CD84Q9UIB8 345 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 KLK13Q9UKR3 277 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 PACSIN2Q9UNF0 486 aaPredicted RBP13.35□□□□□ -0.27
CLK3-213ENST00000563842 CAPN6Q9Y6Q1 641 aa13.35□□□□□ -0.27
CLK3-213ENST00000563842 A0A0U1RQJ8 604 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 LOC285095A0A1B0GVY8 99 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 PRSS38A1L453 326 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 TMEM8BA6NDV4 472 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 YY2O15391 372 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 JUPP14923 745 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 WNT3AP56704 352 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 NR0B2Q15466 257 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 CDKN3Q16667 212 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 UNQ6494/PRO21346Q6UXR6 183 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 CCNI2Q6ZMN8 369 aaPredicted RBP13.34□□□□□ -0.27
CLK3-213ENST00000563842 CACTIN-AS1Q8N1I8 211 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 PELI3Q8N2H9 469 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 OR6C4Q8NGE1 309 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 OR1E3Q8WZA6 343 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 ANP32BQ92688 251 aaKnown RBP13.34□□□□□ -0.27
CLK3-213ENST00000563842 NAT6Q93015 286 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 SCAMP4Q969E2 229 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 PDXPQ96GD0 296 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 HIC2Q96JB3 615 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 SMIM14Q96QK8 99 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 BOCQ9BWV1 1114 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 FSD1LQ9BXM9 530 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 CLPBQ9H078 707 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 CYP4F12Q9HCS2 524 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 FGF22Q9HCT0 170 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 UBP1Q9NZI7 540 aa13.34□□□□□ -0.27
CLK3-213ENST00000563842 PNMA8BQ9ULN7 279 aaPredicted RBP13.34□□□□□ -0.27
CLK3-213ENST00000563842 AAR2Q9Y312 384 aaKnown RBP13.34□□□□□ -0.27
CLK3-213ENST00000563842 A0A0U1RQS6 177 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 EME2A4GXA9 379 aaPredicted RBP13.33□□□□□ -0.28
CLK3-213ENST00000563842 KCNN4O15554 427 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 IVLP07476 585 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 HLA-DPA1P20036 260 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 RPS6KA1Q15418 735 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 ANKRD20A2Q5SQ80 823 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 ANKRD20A1Q5TYW2 823 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 ANKRD20A3Q5VUR7 823 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 AADACL2Q6P093 401 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 KDELC1Q6UW63 502 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 LYSMD3Q7Z3D4 306 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 TMC3Q7Z5M5 1100 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 TAF8Q7Z7C8 310 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 TRIM58Q8NG06 486 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 HERPUD2Q9BSE4 406 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 RIOK2Q9BVS4 552 aaKnown RBP13.33□□□□□ -0.28
CLK3-213ENST00000563842 GSDMCQ9BYG8 508 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 FRMD8Q9BZ67 464 aaPredicted RBP13.33□□□□□ -0.28
CLK3-213ENST00000563842 FRMD8P1Q9BZ68 369 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms