RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	KIF2B	Q8N4N8	673 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TEX9	Q8N6V9	391 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	ATP11C	Q8NB49	1132 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	GLIS1	Q8NBF1	620 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MCPH1	Q8NEM0	835 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	C16orf52	Q8NHV5	167 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	GDAP1	Q8TB36	358 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MGARP	Q8TDB4	240 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FBXO41	Q8TF61	875 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	AUTS2	Q8WXX7	1259 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	LPAR1	Q92633	364 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ATP6V0A1	Q93050	837 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SKA1	Q96BD8	255 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FAM136A	Q96C01	138 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SAAL1	Q96ER3	474 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	WBP1	Q96G27	269 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ZBED3	Q96IU2	234 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	SLITRK1	Q96PX8	696 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CCDC77	Q9BR77	488 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	C11orf70	Q9BRQ4	267 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ADI1	Q9BV57	179 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	OSBPL8	Q9BZF1	889 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MMADHC	Q9H3L0	296 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	TRABD	Q9H4I3	376 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TDRD3	Q9H7E2	651 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	MRPL47	Q9HD33	250 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	SAYSD1	Q9NPB0	183 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ACP6	Q9NPH0	428 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SAR1A	Q9NR31	198 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PXMP2	Q9NR77	195 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TBC1D22B	Q9NU19	505 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FBXO28	Q9NVF7	368 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DNAJC17	Q9NVM6	304 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	DDX56	Q9NY93	547 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	TMOD2	Q9NZR1	351 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	CHORDC1	Q9UHD1	332 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PGAP2	Q9UHJ9	254 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ANAPC5	Q9UJX4	755 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CCPG1	Q9ULG6	757 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PHTF1	Q9UMS5	762 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NAALADL1	Q9UQQ1	740 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DRG1	Q9Y295	367 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	L3MBTL1	Q9Y468	752 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	LRRC42	Q9Y546	428 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	GBF1	Q92538	1859 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SCN1A	P35498	2009 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD36	A6QL64	1941 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PTPRD	P23468	1912 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	GREB1	Q4ZG55	1949 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	MIA3	Q5JRA6	1907 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	FAM170A	A1A519	330 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TMEM150B	A6NC51	233 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SIGLEC16	A6NMB1	481 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	FOXO6	A8MYZ6	492 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858		E5RJQ4	531 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DDX39A	O00148	427 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	KLF11	O14901	512 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	HNRNPDL	O14979	420 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	ATP2A1	O14983	1001 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ALOX15B	O15296	676 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	AHCYL1	O43865	530 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	FAM189A1	O60320	539 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DKC1	O60832	514 aa	Known RBP eCLIP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	DIAPH2	O60879	1101 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SPAG6	O75602	509 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TMEM63A	O94886	807 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TGDS	O95455	350 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ASS1	P00966	412 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	CALCA	P01258	141 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	C1QA	P02745	245 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CALB1	P05937	261 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ATP5B	P06576	529 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	FES	P07332	822 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RHO	P08100	348 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ASNS	P08243	561 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RPSA	P08865	295 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	LINGO3	P0C6S8	592 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TROVE2	P10155	538 aa	Known RBP eCLIP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	KRT5	P13647	590 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TCF4	P15884	667 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CD58	P19256	250 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DDC	P20711	480 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ENPP1	P22413	925 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CA4	P22748	312 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ADRA1D	P25100	572 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PTPN4	P29074	926 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ALDH3A1	P30838	453 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PHB	P35232	272 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CETN2	P41208	172 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	MAGEA6	P43360	314 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	NAMPT	P43490	491 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	VPS41	P49754	854 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RASSF2	P50749	326 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RAP1GDS1	P52306	607 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RBM5	P52756	815 aa	Known RBP eCLIP	2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms