RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATP6AP2A0A1C7CYW4 349 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 IGLON5A6NGN9 336 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 SPECC1L-ADORA2AF8WAN1 911 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CACNB4O00305 520 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 MUSKO15146 869 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 RRP9O43818 475 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 GCATO75600 419 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ATP6AP2O75787 350 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CHEK2O96017 543 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 APOA4P06727 396 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 H2AFXP16104 143 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ITPKAP23677 461 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ACTR1BP42025 376 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 IL12RB1P42701 662 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 MAPK8P45983 427 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CPA2P48052 419 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ALDH18A1P54886 795 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ACTR1AP61163 376 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 RPL6Q02878 288 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 KLF1Q13351 362 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CAMK1Q14012 370 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 HIBCHQ6NVY1 386 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 Q6ZS52 159 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 RFLNAQ6ZTI6 216 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 C12orf40Q86WS4 652 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 WDR75Q8IWA0 830 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 SUGP1Q8IWZ8 645 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CPNE9Q8IYJ1 553 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 TMEFF1Q8IYR6 380 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 OVCA2Q8WZ82 227 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 PYCR2Q96C36 320 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 MOCOSQ96EN8 888 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 SRPK1Q96SB4 655 aaKnown RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 CDCA3Q99618 268 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ACTR8Q9H981 624 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 IL1RL2Q9HB29 575 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 PCDH12Q9NPG4 1184 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF711Q9Y462 761 aa5.44□□□□□ -1.54
VPS13C-209ENST00000560637 A0A1W2PPC1 479 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 GSAPA4D1B5 854 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 NEMP2A6NFY4 417 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PRRT4C9JH25 899 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 OR1I1O60431 355 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SPAG6O75602 509 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TM7SF2O76062 418 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RECQL5O94762 991 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 VNN2O95498 520 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ITGA2BP08514 1039 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PCNAP12004 261 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 HNRNPLP14866 589 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 AMD1P17707 334 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 HNF1BP35680 557 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 HSPA9P38646 679 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 GRIA2P42262 883 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 GNPDA1P46926 289 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CDKN1CP49918 316 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SERPINB9P50453 376 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ARSDP51689 593 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 NEK3P51956 506 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 NKX3-2P78367 333 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LAMB3Q13751 1172 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SPANXN3Q5MJ09 141 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 C6orf10Q5SRN2 563 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 AGAP9Q5VTM2 703 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 OTUD1Q5VV17 481 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC8BQ6P9F7 803 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 POTEHQ6S545 545 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZDHHC24Q6UX98 284 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF852Q6ZMS4 543 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF761Q86XN6 746 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ARHGAP12Q8IWW6 846 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RAVER1Q8IY67 606 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 UMODL1-AS1Q8N2C9 162 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 AENQ8WTP8 325 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 MCUR1Q96AQ8 359 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LINGO1Q96FE5 620 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FRMD8Q9BZ67 464 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LMAN2LQ9H0V9 348 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RHBGQ9H310 441 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF446Q9NWS9 450 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 NDOR1Q9UHB4 597 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 APPL1Q9UKG1 709 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 GRID1Q9ULK0 1009 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TCAF1Q9Y4C2 921 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PSAT1Q9Y617 370 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ATXN2Q99700 1313 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 A0A1W2PQU0 124 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC72A6NJI9 287 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ISM1B1AKI9 464 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ALDH4A1P30038 563 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 NTSR1P30989 418 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RPA3P35244 121 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SPAM1P38567 509 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SLC1A2P43004 574 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ARCN1P48444 511 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SERPINB8P50452 374 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 STX1BP61266 288 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CYP4F2P78329 520 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ARF5P84085 180 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CDK16Q00536 496 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms