RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GGNBP1Q5YKI7 109 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 FAM171BQ6P995 826 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 STXBP4Q6ZWJ1 553 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 TDRPQ86YL5 185 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 DHX40Q8IX18 779 aaKnown RBP4.29□□□□□ -1.72
VPS13C-208ENST00000559119 SPICE1Q8N0Z3 855 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 LYG1Q8N1E2 194 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 STPG4Q8N801 248 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 PYGO2Q9BRQ0 406 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 MMP25Q9NPA2 562 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 HINT3Q9NQE9 182 aaKnown RBP4.29□□□□□ -1.72
VPS13C-208ENST00000559119 ZNF624Q9P2J8 865 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-208ENST00000559119 PRSS21Q9Y6M0 314 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 HHLA1C9JL84 531 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 ZNHIT1O43257 154 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 IGHV4-39P01824 125 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 TMEM35AQ53FP2 167 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 DUS1LQ6P1R4 473 aaKnown RBP4.28□□□□□ -1.72
VPS13C-208ENST00000559119 C15orf39Q6ZRI6 1047 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 GTSCR1Q86UQ5 136 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 PLD5Q8N7P1 536 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 HUS1BQ8NHY5 278 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 LRR1Q96L50 414 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 ASCL2Q99929 193 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 TFB2MQ9H5Q4 396 aaKnown RBP4.28□□□□□ -1.72
VPS13C-208ENST00000559119 BEX4Q9NWD9 120 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-208ENST00000559119 TAGLN3Q9UI15 199 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 ERVK-11Q9UQG0 969 aa4.28□□□□□ -1.72
VPS13C-208ENST00000559119 TEX22C9J3V5 150 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 SYNGR3O43761 229 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 BAG4O95429 457 aaKnown RBP4.27□□□□□ -1.73
VPS13C-208ENST00000559119 TFP02787 698 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 IRF1P10914 325 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 POLR2CP19387 275 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-208ENST00000559119 HOXC13P31276 330 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 DCTP40126 519 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 AMPHP49418 695 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 SORDQ00796 357 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 GRIK2Q13002 908 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 SLC12A1Q13621 1099 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 MORC3Q14149 939 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 OR7E24Q6IFN5 339 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 PCDH20Q8N6Y1 951 aaKnown RBP4.27□□□□□ -1.73
VPS13C-208ENST00000559119 QRFPRQ96P65 431 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 PCYT2Q99447 389 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 REEP2Q9BRK0 252 aa4.27□□□□□ -1.73
VPS13C-208ENST00000559119 PTPRCP08575 1304 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 GOLGA6L10A0A0M3HER8 536 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 TACC1O75410 805 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 CRLF1O75462 422 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 IGLV1-44P01699 117 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 LUMP51884 338 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-208ENST00000559119 GNB1P62873 340 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 IRX1P78414 480 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-208ENST00000559119 FOXM1Q08050 763 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 FOXD4Q12950 439 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-208ENST00000559119 LPAL2Q16609 132 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 WDR45BQ5MNZ6 344 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 TMEM81Q6P7N7 255 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 OR52I2Q8NH67 350 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 LINGO1Q96FE5 620 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 DCTN5Q9BTE1 182 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 UBXN6Q9BZV1 441 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 SLC52A3Q9NQ40 469 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 C20orf141Q9NUB4 165 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 POLG2Q9UHN1 485 aa4.26□□□□□ -1.73
VPS13C-208ENST00000559119 A0A0G2JLW4 131 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 PRKNO60260 465 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-208ENST00000559119 URODP06132 367 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 FAM106CPP0CH98 169 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 CSNK2A1P68400 391 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-208ENST00000559119 NAE1Q13564 534 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 WDR38Q5JTN6 314 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 ANO1Q5XXA6 986 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 SLC46A3Q7Z3Q1 461 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 NOTCH2NLQ7Z3S9 236 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 CSNK2A3Q8NEV1 391 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 ORAI1Q96D31 301 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 ELP4Q96EB1 424 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 PHF7Q9BWX1 381 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-208ENST00000559119 HEMGNQ9BXL5 484 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 PLEKHA4Q9H4M7 779 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 C2CD2Q9Y426 696 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 RNF215Q9Y6U7 377 aa4.25□□□□□ -1.73
VPS13C-208ENST00000559119 CACNA1FO60840 1977 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 CTAGE9A4FU28 777 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 NR5A2O00482 541 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 CIDEAO60543 219 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 GUCY1B2O75343 617 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 CTAGE8P0CG41 777 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 PRSS56P0CW18 603 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 CDH15P55291 814 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 RPL24P83731 157 aaKnown RBP4.24□□□□□ -1.73
VPS13C-208ENST00000559119 TDGQ13569 410 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 UBE4AQ14139 1066 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 RNPS1Q15287 305 aaKnown RBP4.24□□□□□ -1.73
VPS13C-208ENST00000559119 NFIL3Q16649 462 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 TXNDC8Q6A555 127 aa4.24□□□□□ -1.73
VPS13C-208ENST00000559119 APLFQ8IW19 511 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-208ENST00000559119 SUGP1Q8IWZ8 645 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms