RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 THSD7BQ9C0I4 1608 aa12.32□□□□□ -0.44
LDLR-205ENST00000557933 C5orf42Q9H799 3197 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 TRIM43BA6NCK2 446 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 TREHO43280 583 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 IL10P22301 178 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 PIK3CGP48736 1102 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 GSK3BP49841 420 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 NUP107P57740 925 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 SLC10A7Q0GE19 358 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 FRG1Q14331 258 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 GALNT3Q14435 633 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 AGAP9Q5VTM2 703 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CST9Q5W186 159 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 UGT3A1Q6NUS8 523 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 BORAQ6PGQ7 559 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 Q6ZNX1 250 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CAMK1DQ8IU85 385 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ARHGAP12Q8IWW6 846 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ADGRG5Q8IZF4 528 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 LINC01465Q8N7H1 131 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 OR13C4Q8NGS5 318 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 DQX1Q8TE96 717 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 SDCCAG3Q96C92 435 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 MPHOSPH6Q99547 160 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 HNRNPABQ99729 332 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 ING2Q9H160 280 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 NMRK2Q9NPI5 230 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 RGS18Q9NS28 235 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 TBC1D13Q9NVG8 400 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 RCOR3Q9P2K3 495 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 NDUFAF1Q9Y375 327 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 IPPQ9Y573 584 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 PLXNA1Q9UIW2 1896 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 FUOMA2VDF0 154 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ZNF487B1APH4 448 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 PAGE1O75459 146 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CELF2O95319 508 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 SMPD1P17405 629 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 BRCC3P46736 316 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 OR4D2P58180 307 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 IRF5Q13568 498 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 SLC2A7Q6PXP3 512 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ISCA2Q86U28 154 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 STK32CQ86UX6 486 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 EXOC8Q8IYI6 725 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 DHRSXQ8N5I4 330 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 EXOC2Q96KP1 924 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 DNAI2Q9GZS0 605 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 SARS2Q9NP81 518 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 IKZF3Q9UKT9 509 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ASB1Q9Y576 335 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 GMEB1Q9Y692 573 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 NRCAMQ92823 1304 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 MAGEB16A2A368 324 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 BTBD19C9JJ37 291 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 PTGESO14684 152 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ACOX3O15254 700 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 NPHS1O60500 1241 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 SYNCRIPO60506 623 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 MAFKO60675 156 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 HAPLN1P10915 354 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 SLC26A2P50443 739 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 BEX3Q00994 111 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 PFKPQ01813 784 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 LIPEQ05469 1076 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 DNASE1L3Q13609 305 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 SELPLGQ14242 412 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 UGP2Q16851 508 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CYBRD1Q53TN4 286 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ANKRD26P1Q6NSI1 321 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CLEC4FQ8N1N0 589 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ZNF513Q8N8E2 541 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 C2CD4AQ8NCU7 369 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 DDHD1Q8NEL9 900 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 LRRC58Q96CX6 371 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 FCRL2Q96LA5 508 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 SLC2A13Q96QE2 648 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 NFKBIZQ9BYH8 718 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 ALG2Q9H553 416 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 AGPAT4Q9NRZ5 378 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CCM2LQ9NUG4 571 aaPredicted RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 TMLHEQ9NVH6 421 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 CIDEBQ9UHD4 219 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 IPO11Q9UI26 975 aaKnown RBP12.31□□□□□ -0.44
LDLR-205ENST00000557933 VWA7Q9Y334 891 aa12.31□□□□□ -0.44
LDLR-205ENST00000557933 DNAJC25-GNG10A0A024R161 153 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 SUPT3HB4E1H0 165 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TOMM70O94826 608 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 AGXTP21549 392 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 DGKQP52824 942 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TPD52P55327 224 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 RELAQ04206 551 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 YWHAHQ04917 246 aaPredicted RBP12.3□□□□□ -0.44
LDLR-205ENST00000557933 ZNF678Q5SXM1 525 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 DCDC5Q6ZRR9 648 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 TTC39CQ8N584 583 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 OR13J1Q8NGT2 312 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 FBXO30Q8TB52 745 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 CSF3RQ99062 836 aa12.3□□□□□ -0.44
LDLR-205ENST00000557933 SLC30A3Q99726 388 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms