RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SIK2Q9H0K1 926 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 SMOC2Q9H3U7 446 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 ALG2Q9H553 416 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 MAGEE1Q9HCI5 957 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 MID1IP1Q9NPA3 183 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 ABCC13Q9NSE7 274 aa16.25■□□□□ 0.19
SHMT2-231ENST00000557433 EI24O14681 340 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 PIP5K1BO14986 540 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 EEDO75530 441 aaKnown RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 ATE1O95260 518 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 ARSAP15289 507 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 HTR1EP28566 365 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 SLC5A3P53794 718 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 CDKN2DP55273 166 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 KCNK10P57789 538 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 ADARB1P78563 741 aaKnown RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 CTBSQ01459 385 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 ZNF773Q6PK81 442 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 KCTD8Q6ZWB6 473 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 PTGR2Q8N8N7 351 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 TMEM40Q8WWA1 233 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 UPF1Q92900 1129 aaKnown RBP eCLIP16.24■□□□□ 0.194e-7■■■■□ 25.7
SHMT2-231ENST00000557433 KCTD14Q9BQ13 255 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 DCUN1D5Q9BTE7 237 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 C1orf50Q9BV19 199 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 TDRD1Q9BXT4 1180 aaKnown RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 PAIP1Q9H074 479 aaKnown RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 SLC52A3Q9NQ40 469 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 RGS18Q9NS28 235 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 TMEM30AQ9NV96 361 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 SEPT3Q9UH03 358 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 B3GNT3Q9Y2A9 372 aa16.24■□□□□ 0.19
SHMT2-231ENST00000557433 DICER1Q9UPY3 1922 aaKnown RBP16.24■□□□□ 0.19
SHMT2-231ENST00000557433 MAGEB3O15480 346 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PAX3P23760 479 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 VARSP26640 1264 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 TPP2P29144 1249 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 RPL9P32969 192 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 GSK3BP49841 420 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 ADAM17P78536 824 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PHEXP78562 749 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 ACVR1Q04771 509 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 NFYCQ13952 458 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 RCAN2Q14206 197 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 GEN1Q17RS7 908 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 GPR107Q5VW38 600 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 FAM117BQ6P1L5 589 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 TMEM207Q6UWW9 146 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 RPS27LQ71UM5 84 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 DNAJB3Q8WWF6 145 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 TUBGCP3Q96CW5 907 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 FCRL2Q96LA5 508 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 EGFL7Q9UHF1 273 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 LEF1Q9UJU2 399 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 RIMKLBQ9ULI2 386 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 GPR45Q9Y5Y3 372 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 MYLKQ15746 1914 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 POLR2AP24928 1970 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 INPP4BO15327 924 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PRR35P0CG20 571 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 HGFP14210 728 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 LCP2Q13094 533 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 IRF5Q13568 498 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 TWF2Q6IBS0 349 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 MRNIPQ6NTE8 343 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 FAM171BQ6P995 826 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 SFRP1Q8N474 314 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 OR13F1Q8NGS4 319 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 TRUB1Q8WWH5 349 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 MYLPFQ96A32 169 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PTERQ96BW5 349 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 ITPKCQ96DU7 683 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PLEKHA8Q96JA3 519 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 C1orf74Q96LT6 269 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 RDH12Q96NR8 316 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 ACBD6Q9BR61 282 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 IL1RL2Q9HB29 575 aa16.23■□□□□ 0.19
SHMT2-231ENST00000557433 ADARB2Q9NS39 739 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 POLR3BQ9NW08 1133 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 PAIP2BQ9ULR5 123 aaKnown RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 HEMK1Q9Y5R4 338 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-231ENST00000557433 FAM149AA5PLN7 773 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 TULP3O75386 442 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 MT-CO1P00395 513 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 ALBP02768 609 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SLC2A3P11169 496 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 CCNA2P20248 432 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 OGNP20774 298 aaKnown RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 OXTRP30559 389 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 KCNC1P48547 511 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 LIPEQ05469 1076 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 BTG3Q14201 252 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 CBX2Q14781 532 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 MAPRE1Q15691 268 aaKnown RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 CRY1Q16526 586 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 PCSK7Q16549 785 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 AARS2Q5JTZ9 985 aaKnown RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 UMODL1-AS1Q8N2C9 162 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SNX31Q8N9S9 440 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 OR6P1Q8NGX9 317 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms