RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 USP4Q13107 963 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 DLG2Q15700 870 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ACSBG2Q5FVE4 666 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 HECTD2Q5U5R9 776 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 ARID3BQ8IVW6 561 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 STK40Q8N2I9 435 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 OR6Y1Q8NGX8 325 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PDCD6IPQ8WUM4 868 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 JADE3Q92613 823 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 MYO19Q96H55 970 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CDKN2AIPNLQ96HQ2 116 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 TBATAQ96M53 351 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 NDNQ99608 321 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 TTC1Q99614 292 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 C17orf80Q9BSJ5 609 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 IRAK4Q9NWZ3 460 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 PLK2Q9NYY3 685 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 SLC25A13Q9UJS0 675 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 DCTN4Q9UJW0 460 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 RUVBL2Q9Y230 463 aaKnown RBP12.64□□□□□ -0.39
SHMT2-229ENST00000557348 HS3ST2Q9Y278 367 aa12.64□□□□□ -0.39
SHMT2-229ENST00000557348 CCDC162PA2VCL2 907 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 SLCO1B7G3V0H7 640 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 G3V2L1 256 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 STX7O15400 261 aaKnown RBP12.63□□□□□ -0.39
SHMT2-229ENST00000557348 TBX10O75333 385 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 PGLSO95336 258 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 SAT1P21673 171 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 KCNA4P22459 653 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 NFKBIAP25963 317 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 ARSDP51689 593 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 RAB15P59190 212 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 TAS2R39P59534 338 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 TRAF2Q12933 501 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 GRM2Q14416 872 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 ACAP2Q15057 778 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 TEAD2Q15562 447 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 RNF220Q5VTB9 566 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 CNSTQ6PJW8 725 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 LINGO4Q6UY18 593 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 SLC22A9Q8IVM8 553 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 PLPP6Q8IY26 295 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 CENPLQ8N0S6 344 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-229ENST00000557348 PLD6Q8N2A8 252 aaKnown RBP12.63□□□□□ -0.39
SHMT2-229ENST00000557348 PCDH20Q8N6Y1 951 aaKnown RBP12.63□□□□□ -0.39
SHMT2-229ENST00000557348 OR2AP1Q8NGE2 309 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 EXOC2Q96KP1 924 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 BTBD9Q96Q07 612 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 SYTL2Q9HCH5 934 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 MARK1Q9P0L2 795 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 APOBEC2Q9Y235 224 aaKnown RBP12.63□□□□□ -0.39
SHMT2-229ENST00000557348 PCDHGC4Q9Y5F7 938 aa12.63□□□□□ -0.39
SHMT2-229ENST00000557348 HTRA2O43464 458 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PEX1O43933 1283 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PAPLNO95428 1278 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 HSPA4LO95757 839 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 TOP3BO95985 862 aaKnown RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 FDXRP22570 491 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 CCR2P41597 374 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 ABCG1P45844 678 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 SUOXP51687 545 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PTPN5P54829 565 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 DNAJB13P59910 316 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 NAA20P61599 178 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 IRF9Q00978 393 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 ZNF77Q15935 545 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PITRM1Q5JRX3 1037 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PRSS36Q5K4E3 855 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 CERS6Q6ZMG9 384 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 TPGS1Q6ZTW0 290 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PIWIL4Q7Z3Z4 852 aaKnown RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 MTDHQ86UE4 582 aaKnown RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 TMEM126BQ8IUX1 230 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 FSTL5Q8N475 847 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 EFHBQ8N7U6 833 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 RFWD2Q8NHY2 731 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 WFDC5Q8TCV5 224 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 KCTD4Q8WVF5 259 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 MIPEPQ99797 713 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 SPHK2Q9NRA0 654 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 DNAJC28Q9NX36 388 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 NDE1Q9NXR1 346 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 PTTG2Q9NZH5 202 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 THEGQ9P2T0 379 aa12.62□□□□□ -0.39
SHMT2-229ENST00000557348 FCF1Q9Y324 198 aaKnown RBP12.62□□□□□ -0.39
SHMT2-229ENST00000557348 NPHS1O60500 1241 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 NDUFS3O75489 264 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 RFPL2O75678 378 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 GJB3O75712 270 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TM7SF2O76062 418 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CBX6O95503 412 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PYGLP06737 847 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ALOX15P16050 662 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ATP5F1P24539 256 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 HMGCLP35914 325 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 VASPP50552 380 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ADARP55265 1226 aaKnown RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ACTR3P61158 418 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ERVK-21P61565 698 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 SF3A3Q12874 501 aaKnown RBP eCLIP12.61□□□□□ -0.396e-8■■□□□ 12.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms