RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 HID1Q8IV36 788 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 ZNF548Q8NEK5 533 aaPredicted RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 OR4C6Q8NH72 309 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 LMX1AQ8TE12 382 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 C1orf54Q8WWF1 131 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 SCAMP4Q969E2 229 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 TSACCQ96A04 125 aaPredicted RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 EID2BQ96D98 161 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 RTP4Q96DX8 246 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 HIC2Q96JB3 615 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 PBKQ96KB5 322 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 CNDP2Q96KP4 475 aaKnown RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 WDR24Q96S15 920 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 GORASP1Q9BQQ3 440 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 RIOK2Q9BVS4 552 aaKnown RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 HOMER3Q9NSC5 361 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 TRMT1Q9NXH9 659 aaKnown RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 GOLGA6AQ9NYA3 693 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 NLGN3Q9NZ94 848 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 HACD3Q9P035 362 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 KLQ9UEF7 1012 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 APOBEC3BQ9UH17 382 aaKnown RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 PNMA8BQ9ULN7 279 aaPredicted RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 SHOC2Q9UQ13 582 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 ZNF148Q9UQR1 794 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 DRG1Q9Y295 367 aaKnown RBP10.65□□□□□ -0.7
LINC00239-201ENST00000556973 ZNF711Q9Y462 761 aa10.65□□□□□ -0.7
LINC00239-201ENST00000556973 PCNX2A6NKB5 2137 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 MED19A0JLT2 244 aaPredicted RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 TRIM38O00635 465 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SIGLEC6O43699 453 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 METTL18O95568 372 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SOD1P00441 154 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FGGP02679 453 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FGF1P05230 155 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FTH1P19P0C7X4 201 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 CDK4P11802 303 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 CKMT2P17540 419 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 CXCR5P32302 372 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ADRA1AP35348 466 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ACTN2P35609 894 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 CHRNA4P43681 627 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 GDF10P55107 478 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 C1orf61Q13536 156 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SNX1Q13596 522 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ELOCQ15369 112 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SIX1Q15475 284 aaPredicted RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 OASLQ15646 514 aaKnown RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 LONRF2Q1L5Z9 754 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 P3H1Q32P28 736 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 HENMT1Q5T8I9 393 aaKnown RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ZDHHC20Q5W0Z9 365 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 LVRNQ6Q4G3 990 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 RD3Q7Z3Z2 195 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 KLHDC8BQ8IXV7 354 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 RBFAQ8N0V3 343 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FSTL5Q8N475 847 aaPredicted RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SLC25A41Q8N5S1 370 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FAM181AQ8N9Y4 354 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ATG4AQ8WYN0 398 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 TCEAL2Q9H3H9 227 aaPredicted RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 ARNT2Q9HBZ2 717 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 TOR4AQ9NXH8 423 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 FEZ2Q9UHY8 353 aaPredicted RBP10.64□□□□□ -0.71
LINC00239-201ENST00000556973 SPO11Q9Y5K1 396 aa10.64□□□□□ -0.71
LINC00239-201ENST00000556973 PRSS38A1L453 326 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 LMO7DNF2Z398 122 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 AURKAO14965 403 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 YY2O15391 372 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 FFAR2O15552 330 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 CEACAM5P06731 702 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 ANXA6P08133 673 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 ACP1P24666 158 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 DCDC1P59894 354 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 PROX2Q3B8N5 592 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 KCTD11Q693B1 232 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 ZCCHC8Q6NZY4 707 aaKnown RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 C4orf22Q6V702 233 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 GLT6D1Q7Z4J2 308 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SLCO6A1Q86UG4 719 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 GKN2Q86XP6 184 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SLC35F6Q8N357 371 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 RASGEF1CQ8N431 466 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 GPR26Q8NDV2 337 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 DTX3LQ8TDB6 740 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 BRSK1Q8TDC3 778 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 BLOC1S5Q8TDH9 187 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SCG3Q8WXD2 468 aaKnown RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 ADAMTS14Q8WXS8 1223 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 OR1E3Q8WZA6 343 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 GLMNQ92990 594 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 PDXPQ96GD0 296 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SCARF2Q96GP6 870 aaPredicted RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 COX14Q96I36 57 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 PLEKHG4BQ96PX9 1271 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 AGAP2Q99490 1192 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 ZSCAN5AQ9BUG6 496 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 LRRC61Q9BV99 259 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 FICDQ9BVA6 458 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms