RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 DKK1O94907 266 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 C1SP09871 688 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ALPPL2P10696 532 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 CDK4P11802 303 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 TGM2P21980 687 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ACTN2P35609 894 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 RGRP47804 291 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 VPS41P49754 854 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 POLR2LP62875 67 aaKnown RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 DYNLT1P63172 113 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 DAB2P98082 770 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 NSUN2Q08J23 767 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PDE1CQ14123 709 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 LBRQ14739 615 aaKnown RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 P3H1Q32P28 736 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 TMPRSS7Q7RTY8 843 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PARGQ86W56 976 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 CCDC25Q86WR0 208 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 TP53INP2Q8IXH6 220 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 SLC25A45Q8N413 288 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 KDF1Q8NAX2 398 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 HAUS1Q96CS2 278 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ZNF599Q96NL3 588 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PSKH2Q96QS6 385 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ZNF670Q9BS34 389 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 TMEM121BQ9BXQ6 578 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 CAPS2Q9BXY5 557 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PCDH12Q9NPG4 1184 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 UCKL1Q9NWZ5 548 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 RCOR3Q9P2K3 495 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-214ENST00000554604 ZMIZ1Q9ULJ6 1067 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 SHOC2Q9UQ13 582 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PCDHGA1Q9Y5H4 931 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 CHD6Q8TD26 2715 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 PKD1L2Q7Z442 2459 aa12.47□□□□□ -0.41
SHMT2-214ENST00000554604 FREM2Q5SZK8 3169 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 URB1O60287 2271 aaKnown RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 RP1P56715 2156 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 WDFY3Q8IZQ1 3526 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 TSPAN11A1L157 253 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 SRRM3A6NNA2 597 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 SIGLEC6O43699 453 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 LZTS3O60299 673 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 RFPL3O75679 317 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 TTC4O95801 387 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 SHBGP04278 402 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 PECAM1P16284 738 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 CKMT2P17540 419 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 STIP1P31948 543 aaKnown RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 HNF1BP35680 557 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 ACADVLP49748 655 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 EIF3EP60228 445 aaKnown RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 AP1S1P61966 158 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 SLC10A7Q0GE19 358 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 GPS1Q13098 491 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 PTK2BQ14289 1009 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 FZD2Q14332 565 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 TMEM52BQ4KMG9 183 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 RNASEH2BQ5TBB1 312 aaKnown RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 SLC9A4Q6AI14 798 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 GLIS1Q8NBF1 620 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 OR4C6Q8NH72 309 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 CENPTQ96BT3 561 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 TMEM121Q9BTD3 319 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 STMN4Q9H169 189 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-214ENST00000554604 GPR27Q9NS67 375 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 COQ6Q9Y2Z9 468 aa12.46□□□□□ -0.41
SHMT2-214ENST00000554604 FAM208BQ5VWN6 2430 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-214ENST00000554604 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-214ENST00000554604 CFAP69A5D8W1 941 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 FAM149AA5PLN7 773 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 TRIM38O00635 465 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 APOL1O14791 398 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 MUSKO15146 869 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 MAFKO60675 156 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 TCEA3O75764 348 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 AGTP01019 485 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 CSF2P04141 144 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 PRKCGP05129 697 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 ABHD2P08910 425 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 ZSCAN5DPP0CG00 497 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 RBP3P10745 1247 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 C6P13671 934 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 ETS1P14921 441 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 JUPP14923 745 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 NME1P15531 152 aaKnown RBP12.45□□□□□ -0.42
SHMT2-214ENST00000554604 ZFXP17010 805 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-214ENST00000554604 JUNDP17535 347 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 IL4RP24394 825 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 IGFALSP35858 605 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 MMP12P39900 470 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 LIG3P49916 1009 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 PFN3P60673 137 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 YPEL5P62699 121 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 SEMG2Q02383 582 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 MMRN1Q13201 1228 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 LRRC14Q15048 493 aa12.45□□□□□ -0.42
SHMT2-214ENST00000554604 SMAD1Q15797 465 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms