RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TRIM64BA6NI03 449 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 BOLA2-SMG1P6H3BVE0 249 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 PPP6CO00743 305 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 SUPT3HO75486 399 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 S1PR4O95977 384 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 UMPSP11172 480 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 IDO1P14902 403 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 GSK3BP49841 420 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 YBX1P67809 324 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 NEDD8Q15843 81 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 KANK2Q63ZY3 851 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 XKR5Q6UX68 686 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 RYBPQ8N488 228 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 TMEM125Q96AQ2 219 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CNDP2Q96KP4 475 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CYP2S1Q96SQ9 504 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 ANAPC2Q9UJX6 822 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 MBLAC1A4D2B0 266 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 IRAK2O43187 625 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 SIX3O95343 332 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 IGLV3-25P01717 112 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CD1DP15813 335 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 PORP16435 677 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 UGT1A1P22309 533 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 UGT1A4P22310 534 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 UGT1A3P35503 534 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 UGT1A5P35504 534 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 HLCSP50747 726 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 FOXA1P55317 472 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 NFYCQ13952 458 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CCNYL2Q5T2Q4 361 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 TWF2Q6IBS0 349 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 PTRH1Q86Y79 214 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 GPC2Q8N158 579 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 DNAJB14Q8TBM8 379 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 DCPSQ96C86 337 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 FCRL2Q96LA5 508 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 KCTD14Q9BQ13 255 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 TRIM62Q9BVG3 475 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 TRIM8Q9BZR9 551 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 NAA50Q9GZZ1 169 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 MFSD1Q9H3U5 465 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CRYL1Q9Y2S2 319 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 MRPL42Q9Y6G3 142 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 LDLRP01130 860 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 SLC4A1P02730 911 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 INHBBP09529 407 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 CD247P20963 164 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 GRSF1Q12849 480 aaKnown RBP eCLIP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 MOGQ16653 247 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 FSCN1Q16658 493 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 AASDHQ4L235 1098 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 MANEALQ5VSG8 457 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 C16orf87Q6PH81 154 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 LRRC49Q8IUZ0 686 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 PAPD5Q8NDF8 572 aaKnown RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 TSPEARQ8WU66 669 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 RSPH1Q8WYR4 309 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 ATP13A1Q9HD20 1204 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 POLR3BQ9NW08 1133 aaPredicted RBP17.51■□□□□ 0.39
SYNE3-202ENST00000553340 POLG2Q9UHN1 485 aa17.51■□□□□ 0.39
SYNE3-202ENST00000553340 A0A1W2PP18 115 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 TCRBV5S2A0A599 114 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 ZBTB11O95625 1053 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 SNAP29O95721 258 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 BNIP3Q12983 259 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 SPIDRQ14159 915 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 IL31Q6EBC2 164 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 FAM117BQ6P1L5 589 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 USP51Q70EK9 711 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 MOB2Q70IA6 237 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 GPRC5AQ8NFJ5 357 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 TUBB1Q9H4B7 451 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 CCL22O00626 93 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 VPS4BO75351 444 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 LINC00032P0C843 101 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 OCM2P0CE71 109 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 OCMP0CE72 109 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 MAP4P27816 1152 aaKnown RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 PCSK1P29120 753 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 CCR1P32246 355 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 KCNK10P57789 538 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 LIPEQ05469 1076 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 TNK2Q07912 1038 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 ITKQ08881 620 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 EIF4EBP2Q13542 120 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 PLCL1Q15111 1095 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 PFKFB4Q16877 469 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 RABL3Q5HYI8 236 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 ANKRD26P1Q6NSI1 321 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 MYLPFQ96A32 169 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 IMP4Q96G21 291 aaKnown RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 KCNA7Q96RP8 456 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 SOX17Q9H6I2 414 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 SLC52A3Q9NQ40 469 aa17.5■□□□□ 0.39
SYNE3-202ENST00000553340 MARCH4Q9P2E8 410 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 IFT80Q9P2H3 777 aaPredicted RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 PAIP2BQ9ULR5 123 aaKnown RBP17.5■□□□□ 0.39
SYNE3-202ENST00000553340 UBXN8O00124 270 aa17.49■□□□□ 0.39
SYNE3-202ENST00000553340 NCK1P16333 377 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms