RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CHAF1BQ13112 559 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 NFATC2Q13469 925 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 MAP7Q14244 749 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 INPP5JQ15735 1006 aaPredicted RBP12.86□□□□□ -0.35
VPS29-211ENST00000553128 CNGA3Q16281 694 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.86□□□□□ -0.35
VPS29-211ENST00000553128 NAA35Q5VZE5 725 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 DPY19L2P1Q6NXN4 242 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 C6orf15Q6UXA7 325 aaPredicted RBP12.86□□□□□ -0.35
VPS29-211ENST00000553128 ARCQ7LC44 396 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 HSD11B1LQ7Z5J1 315 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 CREBRFQ8IUR6 639 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 HSCBQ8IWL3 235 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 SFRP1Q8N474 314 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 FAM172AQ8WUF8 416 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 RUFY1Q96T51 708 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 TWSG1Q9GZX9 223 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 ATP13A3Q9H7F0 1226 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 KCND3Q9UK17 655 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 A0A0U1RQS6 177 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 PIPSLA2A3N6 862 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 GOLGA6CA6NDK9 693 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 GOLGA6BA6NDN3 693 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 BIN1O00499 593 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 CREB3O43889 395 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 IVLP07476 585 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 MMEP08473 750 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 GOLGA6DP0CG33 693 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 TNFAIP3P21580 790 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 SDC4P31431 198 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 YBEYP58557 167 aaPredicted RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 NOMO3P69849 1222 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 SH3BP2P78314 561 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 SEMA5AQ13591 1074 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 PARP15Q460N3 678 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 RFLNAQ6ZTI6 216 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 MARK2Q7KZI7 788 aaKnown RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 NOP9Q86U38 636 aaKnown RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 TRIM74Q86UV6 250 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 Q8NA96 180 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 CENPIQ92674 756 aaPredicted RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 SCARF2Q96GP6 870 aaPredicted RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 CELF6Q96J87 481 aaKnown RBP12.85□□□□□ -0.35
VPS29-211ENST00000553128 LRRC19Q9H756 370 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 GOLGA6AQ9NYA3 693 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 DONSONQ9NYP3 566 aa12.85□□□□□ -0.35
VPS29-211ENST00000553128 WASH4PA8MWX3 477 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 PRAMEF11O60813 436 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 CREG1O75629 220 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 KIAA0754O94854 1291 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 SOD1P00441 154 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 PRF1P14222 555 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 LHCGRP22888 699 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 ERCC5P28715 1186 aaPredicted RBP12.84□□□□□ -0.35
VPS29-211ENST00000553128 PPP1R2P41236 205 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 CSNK1DP48730 415 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 GFERP55789 205 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 HHEXQ03014 270 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 BCL2L1Q07817 233 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 FOXM1Q08050 763 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 PAK1Q13153 545 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 RAET1GQ6H3X3 334 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 Q6ZVL8 140 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 STRADAQ7RTN6 431 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 APLFQ8IW19 511 aaPredicted RBP12.84□□□□□ -0.35
VPS29-211ENST00000553128 UMODL1-AS1Q8N2C9 162 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 CBARPQ8N350 705 aaPredicted RBP12.84□□□□□ -0.35
VPS29-211ENST00000553128 NTAN1Q96AB6 310 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 DTD2Q96FN9 168 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 ELMO2Q96JJ3 720 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 OR2M4Q96R27 311 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 TBC1D10AQ9BXI6 508 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 PRKAB1Q9Y478 270 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 POLQO75417 2590 aa12.84□□□□□ -0.35
VPS29-211ENST00000553128 APCP25054 2843 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 HEXIM1O94992 359 aaKnown RBP12.83□□□□□ -0.36
VPS29-211ENST00000553128 GRNP28799 593 aaKnown RBP12.83□□□□□ -0.36
VPS29-211ENST00000553128 PTPN9P43378 593 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 PAPOLAP51003 745 aaKnown RBP12.83□□□□□ -0.36
VPS29-211ENST00000553128 PGDP52209 483 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 BPIFB4P59827 614 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 PYCR3Q53H96 274 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 ARHGAP36Q6ZRI8 547 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 SLFN11Q7Z7L1 901 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 TSPAN33Q86UF1 283 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 PAF1Q8N7H5 531 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 CT55Q8WUE5 264 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 SLC20A1Q8WUM9 679 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 C19orf60Q96EN9 201 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 MFRPQ9BY79 579 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 SLC39A8Q9C0K1 460 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 AKIRIN1Q9H9L7 192 aaPredicted RBP12.83□□□□□ -0.36
VPS29-211ENST00000553128 MLXIPLQ9NP71 852 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 CD84Q9UIB8 345 aa12.83□□□□□ -0.36
VPS29-211ENST00000553128 GTPBP10A4D1E9 387 aaKnown RBP12.82□□□□□ -0.36
VPS29-211ENST00000553128 KRT86O43790 486 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 PALMO75781 387 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 LSM8O95777 96 aaKnown RBP12.82□□□□□ -0.36
VPS29-211ENST00000553128 VIPR1P32241 457 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 SCNN1BP51168 640 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms