RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PIDD1Q9HB75 910 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM248Q9NWD8 314 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CHD7Q9P2D1 2997 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SEPT3Q9UH03 358 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 EIF2B4Q9UI10 523 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 YIPF1Q9Y548 306 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 LRRC37A2A6NM11 1700 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 C1orf232A0A0U1RR37 186 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SAC3D1A6NKF1 404 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 OR6C75A6NL08 312 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 C2orf81A6NN90 581 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 E7ENX8 843 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PSMD12O00232 456 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SDHDO14521 159 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SYN3O14994 580 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 FKTNO75072 461 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CLDN7O95471 211 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 THRAP10827 490 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 HGFP14210 728 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CPOXP36551 454 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 DPP6P42658 865 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CDK7P50613 346 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 STX1BP61266 288 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PSME3P61289 254 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 YBX1P67809 324 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 POU4F1Q01851 419 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 KLC1Q07866 573 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 DDX39BQ13838 428 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CCNIQ14094 377 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 GK3PQ14409 553 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TLDC1Q6P9B6 456 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 RNF111Q6ZNA4 994 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 FRA10AC1Q70Z53 315 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 RAB44Q7Z6P3 723 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CLEC14AQ86T13 490 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ISCA2Q86U28 154 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 MIER2Q8N344 545 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM151AQ8N4L1 468 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CEP70Q8NHQ1 597 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PXYLP1Q8TE99 480 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 GFM2Q969S9 779 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 LINGO1Q96FE5 620 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF333Q96JL9 665 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 GPR78Q96P69 363 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 VN1R3Q9BXE9 311 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 MRPL1Q9BYD6 325 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ASB8Q9H765 288 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 S100A14Q9HCY8 104 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF334Q9HCZ1 680 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TREX1Q9NSU2 369 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TRMT6Q9UJA5 497 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 MID2Q9UJV3 735 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 USP22Q9UPT9 525 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SH3BP1Q9Y3L3 701 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ASB1Q9Y576 335 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ANGPTL3Q9Y5C1 460 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SNX13Q9Y5W8 968 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SLC4A7Q9Y6M7 1214 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 RGSL1A5PLK6 1076 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 KIF3CO14782 793 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 MRASO14807 208 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CCNT2O60583 730 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PRAMEF11O60813 436 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CLASP2O75122 1294 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SMNDC1O75940 238 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 OR4F21O95013 312 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NDST3O95803 873 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 URODP06132 367 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 HOXD9P28356 352 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PBLDP30039 288 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CA5AP35218 305 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SLC7A2P52569 658 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NDST2P52849 883 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ACTR3P61158 418 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SH3BP2P78314 561 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ZXDBP98169 803 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 IL10RBQ08334 325 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 IKBKEQ14164 716 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TRMT5Q32P41 509 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 UNC50Q53HI1 259 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 C6orf10Q5SRN2 563 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PLPP4Q5VZY2 271 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TSPAN33Q86UF1 283 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ZBTB46Q86UZ6 589 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 RALGPS2Q86X27 583 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CCDC117Q8IWD4 279 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 BBS7Q8IWZ6 715 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 FAM126BQ8IXS8 530 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 OR10Q1Q8NGQ4 319 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PYCR2Q96C36 320 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 FUBP3Q96I24 572 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 IGSF21Q96ID5 467 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PAWRQ96IZ0 340 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TSPAN18Q96SJ8 248 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SEPHS2Q99611 448 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 AKTIPQ9H8T0 292 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 EFCAB1Q9HAE3 211 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ZFP14Q9HCL3 533 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms