RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TMX2-CTNND1H3BSU7 103 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CD3EAPO15446 510 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLC7A4O43246 635 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SEC24DO94855 1032 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 H6PDO95479 791 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 MT-ND1P03886 318 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLC2A3P11169 496 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 MTHFD1P11586 935 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CDK4P11802 303 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NCF1P14598 390 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NCK1P16333 377 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FDXRP22570 491 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TBX4P57082 545 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 STX1BP61266 288 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 YWHAHQ04917 246 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 GALNT1Q10472 559 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TUSC3Q13454 348 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FBXL22Q6P050 247 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF280BQ86YH2 543 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CLYBLQ8N0X4 340 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 UMODL1-AS1Q8N2C9 162 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CBR4Q8N4T8 237 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FIBCD1Q8N539 461 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 DCBLD1Q8N8Z6 715 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 OR2T34Q8NGX1 318 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 OR2T3Q8NH03 318 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 VPS33AQ96AX1 596 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLC39A13Q96H72 371 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NSMCE3Q96MG7 304 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SERPINB11Q96P15 392 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 UHRF1Q96T88 793 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 ADAM2Q99965 735 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 GPATCH1Q9BRR8 931 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 OSBPL11Q9BXB4 747 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 MUC3BQ9H195 1237 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PREBQ9HCU5 417 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SMOXQ9NWM0 555 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CMTM6Q9NX76 183 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLAMF8Q9P0V8 285 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 GMIPQ9P107 970 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 ATXN10Q9UBB4 475 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 GALPQ9UBC7 116 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 POLG2Q9UHN1 485 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FAM50BQ9Y247 325 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 ENPP3O14638 875 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 AZIN1O14977 448 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CLASP2O75122 1294 aaKnown RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 PYGLP06737 847 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 HGFP14210 728 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF23P17027 643 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF37AP17032 561 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CDKN1CP49918 316 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CTBSQ01459 385 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 MGAT3Q09327 533 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 MAP7D1Q3KQU3 841 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 PLA2G4EQ3MJ16 856 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 SETMARQ53H47 684 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 RABL3Q5HYI8 236 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 TBCELQ5QJ74 424 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 BEND5Q7L4P6 421 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 MRPL10Q7Z7H8 261 aaKnown RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CPNE9Q8IYJ1 553 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 THEM5Q8N1Q8 247 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CFAP52Q8N1V2 620 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 DNAJB14Q8TBM8 379 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 RNF217Q8TC41 542 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 NUDT8Q8WV74 236 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 TOP1MTQ969P6 601 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 PBXIP1Q96AQ6 731 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 TUBGCP3Q96CW5 907 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 EXOC2Q96KP1 924 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 CYP2S1Q96SQ9 504 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 ZYG11BQ9C0D3 744 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 PIF1Q9H611 641 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 SOX17Q9H6I2 414 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.48□□□□□ -1.21
LIMA1-213ENST00000552720 V9GYQ6 96 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 FRMPD3Q5JV73 1810 aa7.48□□□□□ -1.21
LIMA1-213ENST00000552720 LOC285095A0A1B0GVY8 99 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 UBA6A0AVT1 1052 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 WASH4PA8MWX3 477 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TRMUO75648 421 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PAPSS2O95340 614 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 GLP2RO95838 553 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 GFAPP14136 432 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 RHOQP17081 205 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SLC6A2P23975 617 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 EEF1DP29692 281 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 RANBP1P43487 201 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ACADVLP49748 655 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 AGTR2P50052 363 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PTPRRQ15256 657 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 FUT11Q495W5 492 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 LRRC23Q53EV4 343 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PAQR3Q6TCH7 311 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ERMP1Q7Z2K6 904 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SERINC5Q86VE9 423 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 DDI1Q8WTU0 396 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 DUS3LQ96G46 650 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 RMND5BQ96G75 393 aaPredicted RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms