RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 UBR1Q8IWV7 1749 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 PASKQ96RG2 1323 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 CDRT15L2A8MXV6 281 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 MS4A18H0YCH9 400 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 GJB3O75712 270 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 IL7RP16871 459 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 GABRB1P18505 474 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 CD58P19256 250 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 GPTP24298 496 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 HOXA13P31271 388 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 THPOP40225 353 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 P2RX3P56373 397 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SORDQ00796 357 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 NUCB1Q02818 461 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 NAE1Q13564 534 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 KLF9Q13886 244 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 RABEP1Q15276 862 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 ADIPOQQ15848 244 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 ZNF284Q2VY69 593 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 MON1BQ7L1V2 547 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 ENOSF1Q7L5Y1 443 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 ZNF367Q7RTV3 350 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 PALB2Q86YC2 1186 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SCCPDHQ8NBX0 429 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 C7orf57Q8NEG2 295 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 AGBL3Q8NEM8 1001 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SLC25A28Q96A46 364 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 CALML4Q96GE6 196 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 URB1-AS1Q96HZ7 61 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 FEM1CQ96JP0 617 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SEPT5Q99719 369 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM47Q9BQJ4 181 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 KRCC1Q9NPI7 259 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 MKKSQ9NPJ1 570 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 ANKEF1Q9NU02 776 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 NKIRAS2Q9NYR9 191 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SUCLA2Q9P2R7 463 aaPredicted RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM5Q9Y2B1 443 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 SRPRBQ9Y5M8 271 aaKnown RBP5□□□□□ -1.61
LIMA1-205ENST00000550592 SNX8Q9Y5X2 465 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 BRWD3Q6RI45 1802 aa5□□□□□ -1.61
LIMA1-205ENST00000550592 TET3O43151 1660 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 DISP2A7MBM2 1401 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 KIAA1107Q9UPP5 1409 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 ASXL1Q8IXJ9 1541 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 A0A1W2PQ09 198 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 WDR91A4D1P6 747 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM202A6NGA9 273 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PPEF2O14830 753 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 WNT9BO14905 357 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 SOX30O94993 753 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PGM3O95394 542 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CLTBP09497 229 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 COMPP49747 757 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 TRAF1Q13077 416 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 TWIST1Q15672 202 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CFAP58Q5T655 872 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PMS2CLQ68D20 193 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 HIST2H2BCQ6DN03 193 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 HIST2H2BDQ6DRA6 164 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 DPY19L2P1Q6NXN4 242 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 ANKRD54Q6NXT1 300 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 Q6ZSV7 163 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 MTSS1LQ765P7 747 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CTU1Q7Z7A3 348 aaKnown RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 RNF168Q8IYW5 571 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM199Q8N511 208 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 C1orf131Q8NDD1 294 aaKnown RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 ZKSCAN4Q969J2 545 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 ERP27Q96DN0 273 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 VCPIP1Q96JH7 1222 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 APOLD1Q96LR9 279 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 NLRP4Q96MN2 994 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 OR2A14Q96R47 310 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 MAK16Q9BXY0 300 aaKnown RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 KRTAP17-1Q9BYP8 105 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CLK4Q9HAZ1 481 aaKnown RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 POT1Q9NUX5 634 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM51Q9NW97 253 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CISD1Q9NZ45 108 aaKnown RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 IL36RNQ9UBH0 155 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 FBXL17Q9UF56 701 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PCDHGB4Q9UN71 923 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 ERVK-11Q9UQG0 969 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 STON1Q9Y6Q2 735 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 MAU2Q9Y6X3 613 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PARD3Q8TEW0 1356 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 COL3A1P02461 1466 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-205ENST00000550592 PRXQ9BXM0 1461 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 MAST1Q9Y2H9 1570 aa4.99□□□□□ -1.61
LIMA1-205ENST00000550592 CFAP65Q6ZU64 1925 aaKnown RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 H0YGN5 161 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 MOSPD3O75425 235 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 LCATP04180 440 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 CYP1A2P05177 515 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 RB1P06400 928 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 TMEM11P17152 192 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 RFX5P48382 616 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 CLCN3P51790 818 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms