RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 IVLP07476 585 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 FURINP09958 794 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 MMP8P22894 467 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 MAN1A1P33908 653 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 RFC1P35251 1148 aaPredicted RBP12.7□□□□□ -0.38
SCAF11-208ENST00000546534 COPB1P53618 953 aaKnown RBP12.7□□□□□ -0.38
SCAF11-208ENST00000546534 CDK3Q00526 305 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 PEX6Q13608 980 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 CNGA3Q16281 694 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 OR10G6Q8NH81 332 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 SLC30A5Q8TAD4 765 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 EPS8L1Q8TE68 723 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 SLC20A1Q8WUM9 679 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 CELF6Q96J87 481 aaKnown RBP12.7□□□□□ -0.38
SCAF11-208ENST00000546534 NSMCE3Q96MG7 304 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 C11orf70Q9BRQ4 267 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 LRRC19Q9H756 370 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 CATSPERBQ9H7T0 1116 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 SLC17A4Q9Y2C5 497 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 RPS6KL1Q9Y6S9 549 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 A1L4Q6 167 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 TTLL8A6PVC2 850 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 PALMO75781 387 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 PDGFAP04085 211 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 CYP1A1P04798 512 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 ERCC5P28715 1186 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 ETV3P41162 512 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 FASLGP48023 281 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 ERV3-1Q14264 604 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 KLHDC7AQ5VTJ3 777 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 DENND2CQ68D51 928 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SCYL2Q6P3W7 929 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 WDR59Q6PJI9 974 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 DOK6Q6PKX4 331 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 WDR74Q6RFH5 385 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 CBARPQ8N350 705 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 ESX1Q8N693 406 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SLC37A2Q8TED4 501 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 NCSTNQ92542 709 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 RNF31Q96EP0 1072 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SCARF2Q96GP6 870 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SLC38A3Q99624 504 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 NAA15Q9BXJ9 866 aaKnown RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SLC39A8Q9C0K1 460 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 NOCTQ9UK39 431 aaKnown RBP12.69□□□□□ -0.38
SCAF11-208ENST00000546534 TLK1Q9UKI8 766 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 FZD10Q9ULW2 581 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 PCDHB3Q9Y5E6 796 aa12.69□□□□□ -0.38
SCAF11-208ENST00000546534 SPENQ96T58 3664 aaKnown RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 POLR1CO15160 346 aaPredicted RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 FGF10O15520 208 aaPredicted RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 RFPL1O75677 317 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 HEXIM1O94992 359 aaKnown RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 MAP3K6O95382 1288 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 EML2O95834 649 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 KRT3P12035 628 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 GPD1P21695 349 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 PAPOLAP51003 745 aaKnown RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 SCNN1BP51168 640 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 NDST2P52849 883 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 MAP7Q14244 749 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 MAN2A1Q16706 1144 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 ZNF787Q6DD87 383 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 RAET1GQ6H3X3 334 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 HSD11B1LQ7Z5J1 315 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 TMEM135Q86UB9 458 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 SFRP1Q8N474 314 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 CPT1CQ8TCG5 803 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 DTD2Q96FN9 168 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 OR2M4Q96R27 311 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 CINPQ9BW66 212 aaPredicted RBP12.68□□□□□ -0.38
SCAF11-208ENST00000546534 NDST4Q9H3R1 872 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 KCTD5Q9NXV2 234 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 KLHL3Q9UH77 587 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 POLHQ9Y253 713 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 TMEM98Q9Y2Y6 226 aa12.68□□□□□ -0.38
SCAF11-208ENST00000546534 ITPR2Q14571 2701 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 TTC24A2A3L6 582 aaPredicted RBP12.67□□□□□ -0.38
SCAF11-208ENST00000546534 GOLGA6CA6NDK9 693 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 GOLGA6BA6NDN3 693 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 F8VZ95 297 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 CCP110O43303 1012 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 GOLGA6DP0CG33 693 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 UCHL3P15374 230 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 ZNF28P17035 718 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 CHRNB2P17787 502 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 COL8A1P27658 744 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 VIPR1P32241 457 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 DLSTP36957 453 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 NOP2P46087 812 aaKnown RBP12.67□□□□□ -0.38
SCAF11-208ENST00000546534 AP1S1P61966 158 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 FMO1Q01740 532 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 NSUN2Q08J23 767 aaKnown RBP eCLIP12.67□□□□□ -0.38
SCAF11-208ENST00000546534 PTP4A2Q12974 167 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 PTPRRQ15256 657 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 MIIPQ5JXC2 388 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 Q6ZVL8 140 aa12.67□□□□□ -0.38
SCAF11-208ENST00000546534 MARK2Q7KZI7 788 aaKnown RBP12.67□□□□□ -0.38
SCAF11-208ENST00000546534 ULBP3Q9BZM4 244 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms